PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

SBP

Protein Properties

Length: 336aa MW: 36048.6 Da PI: 8.697

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do005959.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	50.3	6.3e-16	196	236	2	42
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrf 42 CqvegC+adls+ak+yhr+hkvCevh+kap+v+ + Do005959.1 196 CQVEGCKADLSSAKDYHRKHKVCEVHAKAPKVIKQHDITIL 236 ********************************988765555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.8E-15	188	230	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	13.075	193	270	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-14	195	237	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-10	196	233	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MIETSKASAT SFHIHRREQQ LRFLILLGRI EIFSSAMGSF GMNWNQKNSM VWDWENLAPS 60 VPNEITRHGS ANSSGGTLTS SSELGHGSSK SSISASIDSP CGVGNSLEFN FAAVERHVKD 120 VGKNGRVDDL RTSPSSMIAF SHGEPSISLK LGKRAYFENV CGRQDVKNSA PSTVTSALTV 180 VKKTKVSQQN AKNSYCQVEG CKADLSSAKD YHRKHKVCEV HAKAPKVIKQ HDITILCSDL 240 HFTPVIISGV ETSATASNSN GAPELGRALS LLSDCSWGSS STVIQQANSH AHAGALPPLA 300 VSNTVMHPLN PSLGRFWHDN PPPLDGTAQI QALAHL

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do005959.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184707	0.0	KF184707.1 Saccharum hybrid cultivar R570 clone BAC 084G07 complete sequence.
GenBank	KF184833	0.0	KF184833.1 Saccharum hybrid cultivar R570 clone BAC 001I10 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966343.1	1e-100	squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_004966344.1	1e-100	squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_004966345.1	1e-100	squamosa promoter-binding-like protein 12 isoform X1
Refseq	XP_022681748.1	1e-100	squamosa promoter-binding-like protein 12 isoform X1
Swissprot	A2YGR5	1e-61	SPL12_ORYSI; Squamosa promoter-binding-like protein 12
Swissprot	Q5Z818	2e-61	SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBL	A0A1E5W816	0.0	A0A1E5W816_9POAL; Squamosa promoter-binding-like protein 12
STRING	Si006471m	1e-100	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3697	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.4	4e-21	squamosa promoter binding protein-like 10

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853]