PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do005671.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 261aa MW: 27145.6 Da PI: 6.6132 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.5 | 2.5e-39 | 36 | 136 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++p+++r da+ +++yeA+ar+rdP+yG+v++i++l+qq+ +l+ael +l+ Do005671.1 36 PCGACKFLRRKCVSGCIFAPYFDSEQgAVHFAAVHKVFGASNVSKLLLQIPPNKRLDAVVTVCYEAQARLRDPIYGCVSHIFALEQQVVNLQAELTYLQ 134 7***********************9989*******************************************************************9988 PP DUF260 99 ee 100 + Do005671.1 135 GH 136 65 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.084 | 35 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-38 | 36 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MSSSVAGASA GSSPGGPGGS SVAGAVAGVG GGGGGPCGAC KFLRRKCVSG CIFAPYFDSE 60 QGAVHFAAVH KVFGASNVSK LLLQIPPNKR LDAVVTVCYE AQARLRDPIY GCVSHIFALE 120 QQVVNLQAEL TYLQGHLTTM ELPTPPPFAG HSQMPITAAF SVSNLTPSSN VPATVDLSNL 180 LDPQTQSQQW AFHLQQQQVL QQQQLLPQPQ YNQMEDGSGR AAGGSGTMDG GDLQALAREL 240 LDRHGRVAVG SQPEPPTPAT Q |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 32 | 130 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 32 | 130 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do005671.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP094077 | 1e-111 | FP094077.1 Phyllostachys edulis cDNA clone: bphylf043i04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307456.1 | 1e-102 | LOB domain-containing protein 30 | ||||
Swissprot | O22131 | 4e-67 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | A0A1E5UT08 | 0.0 | A0A1E5UT08_9POAL; LOB domain-containing protein 18 | ||||
STRING | Pavir.Ib02517.1.p | 1e-101 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45420.1 | 4e-61 | LOB domain-containing protein 18 |
Publications ? help Back to Top | |||
---|---|---|---|
|