 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do005603.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
Trihelix |
| Protein Properties |
Length: 319aa MW: 34787.2 Da PI: 10.2554 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do005603.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 41.7 | 3e-13 | 18 | 104 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ e+ aL++a ++ +l+rg+l++p+W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ + s ++++ ql+
Do005603.1 18 CWSEGETAALVDAWGSRYVDLNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGP------SPWAFYGQLD 104
7*******************************************999999********************9998775......3577777775 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYVDLNR GSLRQPQWRE VADAVNSRPG 60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGPSPWAFY GQLDYLVGPT LTGAGGKKPS 120
PPRAALPVFR RRKSPSRSPS PQSPPPLPMA LPLPNYRRGS DLPAANLIHK AAAAAAAAAA 180
ESDSEDGYNN NDYDDDDGSQ QSPSRSVSSR SGGGAAAAPA VGSKRKMSSG SGGFGELARA 240
IETFAEMYER MEASKQRHAE EMERQRIKFL KDLELKRMQA FVDMQLQFAR AKHARKGDAS 300
SEMLMSLAAL PFLSSPAYL
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727855 | 0.0 | KJ727855.1 Zea mays clone pUT5900 trihelix transcription factor (THX17) gene, partial cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G14180.1 | 3e-29 | sequence-specific DNA binding transcription factors |
