PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MYB

Protein Properties

Length: 271aa MW: 29082.1 Da PI: 9.3985

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do005553.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Do005553.1 14 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.7	4e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +del+++++++lG++ W++Ia ++ gRt++++k++w+++ Do005553.1 67 RGNFTDGDDELIIKLHAMLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.243	9	61	IPR017930	Myb domain
SMART	SM00717	4.1E-14	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.09E-28	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.68E-12	16	61	No hit	No description
PROSITE profile	PS51294	26.894	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-14	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	7.50E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDGDDELIIK LHAMLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPQTHRPLS SGTGSAAAAA ASGLTTSSTA GFPSPSPAPR PARPAIAIPP NVMFARPAPS 180 EDGHSSSGGS TDAPRCPDLN LDLDLSVGPP CSPPKTPPAA ASTPTSQQQQ RTTAICLCYH 240 LGVRSGEACS CKTASPAGFR FLRPLEEGQY I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-29	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do005553.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035447	0.0	BT035447.1 Zea mays full-length cDNA clone ZM_BFb0063G11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456719.1	1e-178	myb-related protein 308
Swissprot	P81393	2e-96	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A1E5WJZ8	0.0	A0A1E5WJZ8_9POAL; Transcription repressor MYB4
STRING	Sb03g041360.1	1e-178	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-85	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]