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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do005544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 1049aa MW: 113469 Da PI: 5.4736 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 44.3 | 4e-14 | 958 | 986 | 27 | 55 |
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 A+Pk+i++lm+v+gLt+e+v+SHLQkYR+ Do005544.1 958 AVPKSIVRLMNVEGLTRENVASHLQKYRI 986 9***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07990 | 4.0E-149 | 311 | 717 | IPR012940 | Nucleic acid binding NABP |
PROSITE profile | PS50303 | 69.423 | 618 | 985 | IPR033133 | Pumilio homology domain |
CDD | cd07920 | 9.13E-109 | 688 | 942 | IPR033712 | Pumilio, RNA binding domain |
SuperFamily | SSF48371 | 2.01E-78 | 701 | 941 | IPR016024 | Armadillo-type fold |
Gene3D | G3DSA:1.25.10.10 | 1.1E-22 | 701 | 774 | IPR011989 | Armadillo-like helical |
SMART | SM00025 | 1.5E-5 | 718 | 753 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 11.44 | 718 | 753 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 5.0E-6 | 719 | 751 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 7.871 | 754 | 790 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 0.0014 | 754 | 790 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 3.0E-5 | 757 | 788 | IPR001313 | Pumilio RNA-binding repeat |
Gene3D | G3DSA:1.25.10.10 | 7.3E-67 | 775 | 941 | IPR011989 | Armadillo-like helical |
SMART | SM00025 | 2.7E-7 | 791 | 826 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 10.904 | 791 | 826 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 4.0E-9 | 792 | 824 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 12.117 | 828 | 863 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 1.1E-6 | 828 | 863 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 3.1E-7 | 829 | 861 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 9.457 | 864 | 899 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 1.4E-5 | 864 | 899 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 2.0E-4 | 865 | 894 | IPR001313 | Pumilio RNA-binding repeat |
PROSITE profile | PS50302 | 11.067 | 900 | 941 | IPR001313 | Pumilio RNA-binding repeat |
SMART | SM00025 | 2.6E-7 | 906 | 941 | IPR001313 | Pumilio RNA-binding repeat |
Pfam | PF00806 | 6.2E-8 | 914 | 940 | IPR001313 | Pumilio RNA-binding repeat |
SuperFamily | SSF46689 | 3.58E-7 | 956 | 990 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-11 | 957 | 986 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.9E-14 | 958 | 990 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1049 aa Download sequence Send to blast |
MGGGGGEEEP EDELDALLSS GAGGQRRRPV DAGERERERE LSVFRSGSAP PTIEGSLNAI 60 SGLLRGDGEA AVTAAPIPVA EASNGHGGLL SEEELRADPA YLKYYYSHGN LNPRLPPPVL 120 SKEDWRSTQR LKAGVVGGIG DRRKAGQEDV GQGMGTAVGR SLFSQHPGSE QEEETRSDGG 180 GAAEWVDGGG DGLIGLSLGR QRSFADILQT EPYLVSYGLF QDNIGRRTPT SEYPSRAASR 240 NSFLDNQEPV NSAENQYSMH TDILDAHHPV GNVQNVSGLH SLNASTSQTF ASILGSSVSR 300 NATPDPHYVA RVPSPGLPPV GVRITSNEKK LNCSSSPFNT VSSKAVGADD ILSALSSMNL 360 SKSGTLNGNN NISRSNFQRE TSDQQKFALD SQAGQVNKQH PVMLESDDEY LGIPSMSQPS 420 NSSFADVNKS VAGLAELRNS TNSRLDGHLE MQRSSTLSAR SYQKSPSSSN ESPGGSPAQH 480 QNFDSINSAF LNYGLTGYPL SPGLPSMMPP LFESAAAASA IASLGVDSRN LGNNILSSPT 540 LSLTDVHSLG LGGNQAPTGL QSPLSDPFYV QYLKSTQYAA QGAGSYGDPS LERGYMGSSY 600 ANLNAVQKAY IEALLQQQKQ YEMPLFGKST ASNHGYYGNL PYGMGMPYPG SPLGSPVASP 660 SGPGSPLRLG ERNVRFPSNL RNLGGWNTDP SGYMNENFPS SLLDEFKSNK ARSFELAEIA 720 GHVVEFSADQ YGSRFIQQKL ETATVEEKSM VFEEIMPNAL SLMTDVFGNY VVQKKCIECI 780 PEDSIQFIIS TFYGHVVPLS THPYGCRVIQ RVLEHCADPK TQQIVMDEIL QSVCMLAQDQ 840 YGNYVVQHVL EHGKPHERSI IIEKLAGQII QMSQQKFASN VVEKCLTFGG PTEREVLINE 900 MLGTTYENEP LQAMMKDQFG NYVVQKVLET CDDQQRELIL SRRGGLDFNH KILLDGGAVP 960 KSIVRLMNVE GLTRENVASH LQKYRIYLKR TRNPAAAQPP PPFPTAYSSP FNPQTPSDAS 1020 SRSGFRAFPS GYSEMLERDQ AVSSMGFKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3bsb_A | 8e-68 | 700 | 948 | 3 | 336 | Pumilio homolog 1 |
3bsb_B | 8e-68 | 700 | 948 | 3 | 336 | Pumilio homolog 1 |
3bsx_A | 8e-68 | 700 | 948 | 3 | 336 | Pumilio homolog 1 |
3bsx_B | 8e-68 | 700 | 948 | 3 | 336 | Pumilio homolog 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do005544.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970555.1 | 0.0 | pumilio homolog 2 | ||||
TrEMBL | A0A1E5WED9 | 0.0 | A0A1E5WED9_9POAL; Pumilio-like protein 2 | ||||
STRING | Pavir.Ea03364.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14129 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46640.3 | 2e-13 | G2-like family protein |