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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do005480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 229aa MW: 23891.5 Da PI: 8.025 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 85.7 | 4.9e-27 | 11 | 61 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y+eC++NhAa+lG++a DGC+E++p+ +g++a++ CaACgCHRnFHR+ Do005480.1 11 EVYRECMRNHAAKLGTYASDGCCEYTPD---DGQPATMLCAACGCHRNFHRKAF 61 68*************************8...7889****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.9E-22 | 12 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 4.0E-20 | 13 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.9 | 13 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.9E-21 | 13 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.97E-16 | 103 | 176 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 104 | 177 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-27 | 114 | 175 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEQQHQERPR EVYRECMRNH AAKLGTYASD GCCEYTPDDG QPATMLCAAC GCHRNFHRKA 60 FLDAAAGSPG GGAHAGAMLT SSPGAPAGYG MHMAMVAASM GGDGGAHGGS GGRRRTRTKF 120 TEEQKERMAR FAERLGWRMP KREPSRAPGD DEVGRFCREI GVTRQVFKVW MHNHKASGGS 180 GGAGAGGAAQ TSSSTTRGGG GVGGGGSMSP AMGGDGEDDE EVRGSEMCM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 3e-19 | 113 | 182 | 17 | 80 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do005480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF369906 | 0.0 | AF369906.1 Sorghum bicolor clone BAC10J22 Sbb3766 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798159.1 | 1e-112 | zinc-finger homeodomain protein 11-like | ||||
Swissprot | A2XLF4 | 1e-96 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 1e-96 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A1E5WD41 | 1e-163 | A0A1E5WD41_9POAL; Zinc-finger homeodomain protein 11 | ||||
STRING | Sb01g010020.1 | 1e-105 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9204 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-33 | homeobox protein 22 |