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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do005424.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
NAC |
Protein Properties |
Length: 345aa MW: 38603.7 Da PI: 9.8455 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do005424.1 | genome | Dichan | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 157.4 | 6e-49 | 16 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
+pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v +++++ +
Do005424.1 16 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRMVRVEGNRSI 113
79***************************.89***************888889********************************************** PP
NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
glkktLvfy g+apkg +++W+m+eyrl
Do005424.1 114 GLKKTLVFYVGKAPKGLRSSWIMNEYRL 141
**************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 345 aa
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to blast |
MARGGEDGQH AHDMVMPGFR FHPTEEELID FYLRRRVEGK RFNIELINLV DLYRYDPWDL 60 PALASIGDKE WFFYVPRDRK YRNGDRPNRV TPSGYWKATG ADRMVRVEGN RSIGLKKTLV 120 FYVGKAPKGL RSSWIMNEYR LPHGEADRYQ KEISLCRVYK RPGIEDNFHL TTTTTRSSGS 180 KAATTMEKKH HRTSASPRLA PMFDGGHSSA HMNKPISGAN TVMTSSAAAR VATMAPQTSM 240 AFLSTASLSS TTSTEEDGTS LYHLKQGANP PLLPPSTHAL LNANSTTMAT IPIDELSRAI 300 GSYNNQGNPN QPLPSQGPLL PFPSMEKIWD WNPLLESPKV CTTFK
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-53 | 17 | 161 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 17 | 161 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 17 | 161 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 17 | 161 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-53 | 17 | 161 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-53 | 17 | 161 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-53 | 17 | 161 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-53 | 17 | 161 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-53 | 17 | 161 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-53 | 17 | 161 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-53 | 17 | 161 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-53 | 17 | 161 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-53 | 17 | 161 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 17 | 161 | 19 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |