PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005299.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 489aa    MW: 53389.7 Da    PI: 8.1932
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005299.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.62e-92464751374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 l++lL++cA  v++g + +a+ +L+++ +las d+  ++qRlaa+f+ ALa++l++ v++l++al ++++s  +     aa++ ++++ P++k+++lt+
  Do005299.1  46 LINLLYQCAAEVAAGAFDRANYYLEQITQLASLDApHTLQRLAAVFADALARKLLNLVPGLSRALLSTANS-AEAHLIPAARRHLFDMLPFMKLAYLTT 143
                 6799*******************************99**************************99777776.345555578888*************** PP

        GRAS  99 NqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194
                 N+aIlea+ege+ vH++D++  + + +QW+aL++a+ +R++gpp+lRiT+v++    ske l +++  Lak Ae++++pf+f++ v+ rl++l++++L 
  Do005299.1 144 NHAILEAMEGEKFVHVVDLSgpAANTVQWIALFHAFRARRGGPPHLRITAVHD----SKEFLANMAGVLAKEAEAFDIPFQFSA-VEGRLDELDPDALr 237
                 *******************9667899***************************....9**************************.799*******9996 PP

        GRAS 195 ...rvkpgEalaVnlvlqlhrll...............................................................desvsleserdev 227
                    rv++gEala ++v qlhrll                                                               +++ + + +  ++
  Do005299.1 238 hvlRVRSGEALAMSVVAQLHRLLaaddagrrhvpgsscltplqiiarsspssfgellerelntrlqlspgdsssvvsslspqspaqAQQRPAAAKLGSF 336
                 6667888****************************************************************************9996666666679*** PP

        GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                 L++v+ lsPk++vv+e ea+hn+++Fler le  +            ++r + er+  Er +lg+ei  vva egaer+erhe+l++W +r+e+aG++ 
  Do005299.1 337 LQAVRALSPKIMVVAEPEANHNAATFLERCLERASA-----------AHRCAAERARAERLVLGEEIXGVVAREGAERKERHERLAQWGRRMEAAGMER 424
                 *****************************7776432...........245568899******************************************* PP

        GRAS 327 vplsekaakqaklllrkvk.sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                 v +s+  +++a+ ll+  + ++ y v ++   ++++++W+++pL+svSaWr
  Do005299.1 425 VGMSYGGMMEARKLLQSLGwGELYGVVHDarGEAFFFCWHRKPLYSVSAWR 475
                 *******************88889998553256667**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.84420452IPR005202Transcription factor GRAS
PfamPF035146.9E-9046475IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MDIFPEDTVS SATSSPASSL YSPSPHPHGY GAWVQELSHN QQGVRLINLL YQCAAEVAAG  60
AFDRANYYLE QITQLASLDA PHTLQRLAAV FADALARKLL NLVPGLSRAL LSTANSAEAH  120
LIPAARRHLF DMLPFMKLAY LTTNHAILEA MEGEKFVHVV DLSGPAANTV QWIALFHAFR  180
ARRGGPPHLR ITAVHDSKEF LANMAGVLAK EAEAFDIPFQ FSAVEGRLDE LDPDALRHVL  240
RVRSGEALAM SVVAQLHRLL AADDAGRRHV PGSSCLTPLQ IIARSSPSSF GELLERELNT  300
RLQLSPGDSS SVVSSLSPQS PAQAQQRPAA AKLGSFLQAV RALSPKIMVV AEPEANHNAA  360
TFLERCLERA SAAHRCAAER ARAERLVLGE EIXGVVAREG AERKERHERL AQWGRRMEAA  420
GMERVGMSYG GMMEARKLLQ SLGWGELYGV VHDARGEAFF FCWHRKPLYS VSAWRPAVCR  480
HSGGRLVGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-25344767380Protein SCARECROW
5b3h_A9e-25344766379Protein SCARECROW
5b3h_D9e-25344766379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750390.0EU975039.1 Zea mays clone 465792 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703080.10.0scarecrow-like protein 3
TrEMBLA0A1E5WCK20.0A0A1E5WCK2_9POAL; Scarecrow-like protein 3
STRINGPavir.Cb02147.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-90scarecrow-like 3