PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do005251.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

FAR1

Protein Properties

Length: 116aa MW: 12631 Da PI: 9.7055

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do005251.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.2	7.6e-15	58	116	2	61
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtg 61 Y +YA++vGF+vr+++ +ks+++g+i ++++vCs+eg+++ ++++ ++++++++ trtg Do005251.1 58 LYLSYAQKVGFTVRREYANKSRKSGQISSSKYVCSREGFKALDRRT-NRSKTPQPDTRTG 116 799***************************************9999.9999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-12	58	116	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MGSTSTSREA PPAPPAPPPA PAGDTEAGRR IASLQEAAGD YAPRLCQEFG SELEAYELYL 60 SYAQKVGFTV RREYANKSRK SGQISSSKYV CSREGFKALD RRTNRSKTPQ PDTRTG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do005251.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952692.1	4e-48	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1E5WJK0	7e-78	A0A1E5WJK0_9POAL; Uncharacterized protein (Fragment)
STRING	Si016539m	7e-48	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17298	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-10	FAR1 family protein