PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005210.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 302aa    MW: 31704.2 Da    PI: 9.075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005210.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.7e-07104129227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+ C+ +     Ck Gd+C+FaHg+
  Do005210.1 104 KTRMCNKYNTAEGCKWGDKCHFAHGE 129
                 89**********************96 PP
2zf-CCCH34.82.8e-11268293127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+ C +fa+ G C +GdrC+FaHg+
  Do005210.1 268 FKTKMCENFAK-GSCTFGDRCHFAHGE 293
                 69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356464768IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.9535669IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-1499134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8101133IPR000571Zinc finger, CCCH-type
SMARTSM003560.66102129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878102130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.47E-14164243IPR004088K Homology domain, type 1
SMARTSM003221.7E-9172242IPR004087K Homology domain
PROSITE profilePS5008414.634173237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.0E-14173241IPR004088K Homology domain, type 1
CDDcd001059.00E-13175237No hitNo description
PfamPF000131.5E-10175239IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.9E-15266298IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-7267293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9267297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.981267294IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-8268293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEGGHKRGTA EGANGASASG KRARDAIINC YHIFIIEMLL QLLTQIIFSL CSTSGCPFGE  60
GCHFLHCFPG GYQAVSKMTN LGGPAVAPSP GRMTMGGPPT PTVKTRMCNK YNTAEGCKWG  120
DKCHFAHGER ELGKPMLMDS SMHTPMGPRP TGHFAPPPVA NPGMTTPASF GASATAKISV  180
DASLAGGIIG RGGVNTKQIS RVTGAKLAIR DHESDTSLKN IELEGTFDQI KNASAMVREL  240
IVNISGSAPP PAKNPAGGPH RRGAGSNFKT KMCENFAKGS CTFGDRCHFA HGENELHKPT  300
AA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816019.11e-178zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-150C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1E5WLQ10.0A0A1E5WLQ1_9POAL; Zinc finger CCCH domain-containing protein 14
STRINGSi019853m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-53C3H family protein