 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do005210.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
C3H |
| Protein Properties |
Length: 302aa MW: 31704.2 Da PI: 9.075 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do005210.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21 | 5.7e-07 | 104 | 129 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck Gd+C+FaHg+
Do005210.1 104 KTRMCNKYNTAEGCKWGDKCHFAHGE 129
89**********************96 PP
|
| 2 | zf-CCCH | 34.8 | 2.8e-11 | 268 | 293 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+ C +fa+ G C +GdrC+FaHg+
Do005210.1 268 FKTKMCENFAK-GSCTFGDRCHFAHGE 293
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 46 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 6.953 | 56 | 69 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.7E-14 | 99 | 134 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-8 | 101 | 133 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.66 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.878 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 5.47E-14 | 164 | 243 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 1.7E-9 | 172 | 242 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.634 | 173 | 237 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 2.0E-14 | 173 | 241 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 9.00E-13 | 175 | 237 | No hit | No description |
| Pfam | PF00013 | 1.5E-10 | 175 | 239 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 2.9E-15 | 266 | 298 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.7E-7 | 267 | 293 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.33E-9 | 267 | 297 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.981 | 267 | 294 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.9E-8 | 268 | 293 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MEGGHKRGTA EGANGASASG KRARDAIINC YHIFIIEMLL QLLTQIIFSL CSTSGCPFGE 60
GCHFLHCFPG GYQAVSKMTN LGGPAVAPSP GRMTMGGPPT PTVKTRMCNK YNTAEGCKWG 120
DKCHFAHGER ELGKPMLMDS SMHTPMGPRP TGHFAPPPVA NPGMTTPASF GASATAKISV 180
DASLAGGIIG RGGVNTKQIS RVTGAKLAIR DHESDTSLKN IELEGTFDQI KNASAMVREL 240
IVNISGSAPP PAKNPAGGPH RRGAGSNFKT KMCENFAKGS CTFGDRCHFA HGENELHKPT 300
AA
|
