PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005201.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 87aa    MW: 9854.92 Da    PI: 8.4779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005201.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-101660344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++ E +l+ +a + +G g   +W++++r mg ++t+ +++  +
       Do005201.1 16 TWSKKENKLFEEALAHYGEGtpdRWHKVSRAMGGTKTADEVRRQY 60
                     7*****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.3311268IPR017884SANT domain
SMARTSM007172.3E-81366IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-111572IPR009057Homeodomain-like
CDDcd001671.20E-61663No hitNo description
PfamPF002496.8E-91660IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-51669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSGSRSSSCN VNMASTWSKK ENKLFEEALA HYGEGTPDRW HKVSRAMGGT KTADEVRRQY  60
ELLDEDIKRI ESGSVPFPKY NTQGAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-231384177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo005201.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458271.15e-47protein RADIALIS-like 3
SwissprotQ6NNN02e-24RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A1E5VS263e-59A0A1E5VS26_9POAL; Uncharacterized protein
STRINGSb03g030330.12e-46(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-24RAD-like 1