PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | B3 | ||||||||
Protein Properties | Length: 246aa MW: 26816.7 Da PI: 4.6888 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 85.6 | 4.3e-27 | 57 | 140 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kvltpsdv+k++rlv+pk++ae++ +++l +ed+ g W+++++y+++s++yv+tkGW++Fv+a +L +gD+v F++ Do004914.1 57 FDKVLTPSDVGKLNRLVVPKQHAERFFPAAGAGTQLCFEDRGGMPWRFRYSYWGSSQSYVMTKGWSRFVRAARLTAGDTVSFSR 140 89************************555567789***********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-36 | 51 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.37E-28 | 54 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.37E-25 | 55 | 140 | No hit | No description |
PROSITE profile | PS50863 | 13.437 | 57 | 158 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-18 | 57 | 149 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-24 | 57 | 141 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MYMDLSLGTL VEDTQEVQEE RQEEEQDDDL YQQQALGQDL QHGGGEPGHA VEREHMFDKV 60 LTPSDVGKLN RLVVPKQHAE RFFPAAGAGT QLCFEDRGGM PWRFRYSYWG SSQSYVMTKG 120 WSRFVRAARL TAGDTVSFSR AAAAAAGGRY FIDYRHCQRR SRDISFGDGA AVPAWPIVVG 180 VQRAAAGGRG ATTAVDMVPV PTCQDIEVGT TAGAKSFRLF GFNVECSGED APASASAEVE 240 YVDGDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-44 | 52 | 155 | 3 | 111 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-44 | 52 | 155 | 3 | 111 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004914.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728410 | 1e-108 | KJ728410.1 Zea mays clone pUT6715 ABI3VP1 transcription factor (ABI23) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822547.1 | 1e-135 | putative B3 domain-containing protein Os08g0157700 | ||||
Swissprot | Q7EZD5 | 2e-73 | Y8577_ORYSJ; Putative B3 domain-containing protein Os08g0157700 | ||||
TrEMBL | A0A1E5WI63 | 0.0 | A0A1E5WI63_9POAL; Putative B3 domain-containing protein | ||||
STRING | Si014362m | 1e-121 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14164 | 24 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 6e-44 | B3 family protein |