PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004826.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 1349aa    MW: 149181 Da    PI: 8.9308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004826.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001513141340123
                  EEET..TTTEEESSHHHHHHHHHH..T CS
     zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                  y+Cp   Cg++F+  s++ rH r+  H
  Do004826.1 1314 YVCPelGCGQTFRFVSDFSRHKRRsgH 1340
                  9*********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.7E-151960IPR003349JmjN domain
PROSITE profilePS5118313.6332061IPR003349JmjN domain
PfamPF023752.9E-132154IPR003349JmjN domain
SMARTSM005588.1E-37188363IPR003347JmjC domain
PROSITE profilePS5118433.744188363IPR003347JmjC domain
SuperFamilySSF511972.22E-21200361No hitNo description
PfamPF023732.8E-32218327IPR003347JmjC domain
Gene3DG3DSA:3.30.160.605.8E-412241253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551112311253IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15712541283IPR007087Zinc finger, C2H2
SMARTSM003551412541278IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012561278IPR007087Zinc finger, C2H2
SuperFamilySSF576677.48E-1512651321No hitNo description
Gene3DG3DSA:3.30.160.601.7E-912821308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.71812841313IPR007087Zinc finger, C2H2
SMARTSM003559.7E-412841308IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012861308IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-1013091336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.26113141345IPR007087Zinc finger, C2H2
SMARTSM003550.08113141340IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013161340IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1349 aa     Download sequence    Send to blast
MPSPAQGELV PPWLKTLPLA PEFRPTAAEF ADPIAYLLKI EPAAAPFGIC KIVPPLPPPP  60
KRTTLGNLSR SFAALHPGDP SPTFPTRHQE LGLCPRRPRP ALKPVWHSSR RYTLPQFEAE  120
AGASRKTLLA RLSVPASRHL SPLDVEALFW RFSADRPVAV EYASDMPGSG FPPCDGRPTQ  180
LPAANVGETA WNMRGVARIP ASLLRFLREE VPGVTSPMLY VAMMFSWFAW HVEDHDLHSL  240
NYLHSGAPKT WYGVPRDVAL AFEDVVRVHG YGGEVNCLET FAMLGDKTTV MSPEVLVGSG  300
IPCCRLVQNA GEFVVTFPGS YHSGFSHACE EVLYVAGFNY GEASNIATPQ WLRVAKEAAV  360
RRASINRPPM VSHYQLLYEL ALSMCLRYSS YVAFHFFFLN MLDPSSGAME PRSSRLKEKK  420
KCEGEQLVKK IFVQNVIEDN KLLNHFLSDG SSCIILPTSP NNGSALSTLL SKSQAAQSRI  480
LDGQCSNTEA PKDSGHLPMN GALSSKEISS SVCSGKKFQP TTCMHNCVNM SGSSDANDAE  540
SDKGDINTAA GLLDQGFLSC VTCGILSFSC VAVIKPRECA AKWLMSADSS LISKQFAGSG  600
ESHLVDALQN ATSSGILRSD FQMNGNRIIS DDAPLNRNSA LDLLASAYGD PSDSDEGVLS  660
KKNQVSNVSN ELISHKIESQ PNTSSNGGCA GTNVSSSSKE LQQGPSSQRS QCIGNTNTGP  720
KGVRTRNKYQ LKMVLSEGFQ PKDIYSEIQK KVQCELSSSI KTSVEPLCDA DYQASRNTDA  780
ICMDGNRSTA TMVDNLAASI VKPDKDSSRL HVFCLEHAIE VEKQLQTIGG AHIFLLCRPE  840
YPKIEVEAKL LAEEMEVEYD WKDILFKEAS IEDREKIQEV VQDEETIPTN SDWAVKLGIN  900
LYYSANLAKS PLYNKQLPYN RVIYKAFGCS SPNNSPVKLK TYARRQGRAK KIVLAGRWCG  960
KVWMSNQVHP YLAHRIKSDE PDEIDGICSY QKSNVEHVEN SSREATSRRK SGSAAIEEKT  1020
SKREKVPSEK ANTKKPKHTE EDNSKALEGA AEASTGKSNG RTVVEKASKR KKEPVEKTNS  1080
KKPKHTEEDN SKALKGASEA SSPLPSGMVI RSSSRIANRK NMLKLKMEEE DNGSVSLPKA  1140
KVEEDSDDPA CRSRGRSLRQ KTSIDVKKQT NKTRAEKRKA PNPAALKDEE RTLDVKEFSV  1200
AKTKIEEKQQ MKKTREIKGA PPSSPKRGEE YTCDIEGCSM SFDTKQELSL HKRDICPVKS  1260
CRRKFFSHKY LLQHRKVHND DRPLKCSWKG CDMAFKWPWA RTEHMRVHTG DRPYVCPELG  1320
CGQTFRFVSD FSRHKRRSGH AAKKAKTKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A6e-69133848353Transcription factor jumonji (Jmj) family protein
6ip4_A6e-69133848353Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110681083KRKKEPVEKTNSKKPK
213341348KRRSGHAAKKAKTKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004826.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815151.10.0lysine-specific demethylase JMJ705-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A1E5W0W80.0A0A1E5W0W8_9POAL; Lysine-specific demethylase JMJ705
STRINGSi000062m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]