 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Do004800.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
Family |
WRKY |
Protein Properties |
Length: 327aa MW: 35370 Da PI: 9.8305 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do004800.1 | genome | Dichan | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 94.2 | 9.6e-30 | 183 | 242 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dgy+WrKYGqK+ k++++pr+Y+rC++a Cpvkkkv+rsaed+++++ tYeg+Hnh
Do004800.1 183 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSAEDKTILVATYEGDHNHG 242
58***************************99****************************5 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MDPWIGQPSL SLDLNVGLPT SRPVAPVTKV LVEENFLAVK KDREVEALEA ELRRVGEENK 60 RLSEMLRAVV AKYTELQGQV NVMVVAGNNN SGAANRQSSA SEGGSAASPS RKRIRSDSLD 120 TAGGAGHRKA SPPFAIPVHD QMECTSAAAA VFHEPGKRIR EECKPKVSRR YVHADPADLS 180 LVVKDGYQWR KYGQKVTKDN PCPRAYFRCS FAPACPVKKK VQRSAEDKTI LVATYEGDHN 240 HGQPPQHDGK GVKQAAASEA VRPAPLPLQQ QQQQRHEAAA AAAGPSEVVR KNLAEHMAAT 300 LTRDPGFKAA LASALSGRIL ELSPTRD
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:23462973). Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (PubMed:21961049). Regulates negatively the basal defense responses to the compatible fungus M.oryzae (PubMed:23462973, PubMed:21726398). {ECO:0000250|UniProtKB:Q6QHD1, ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:21961049, ECO:0000269|PubMed:23462973}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (PubMed:23462973). Accumulates in response to M.oryzae (PubMed:21726398). {ECO:0000269|PubMed:21726398, ECO:0000269|PubMed:23462973}. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Zhang Y,Wang L
The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol., 2005. 5: p. 1 [PMID:15629062] - Wu KL,Guo ZJ,Wang HH,Li J
The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res., 2005. 12(1): p. 9-26 [PMID:16106749] - Berri S, et al.
Characterization of WRKY co-regulatory networks in rice and Arabidopsis. BMC Plant Biol., 2009. 9: p. 120 [PMID:19772648] - Delteil A, et al.
Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence. Mol. Plant Pathol., 2012. 13(1): p. 72-82 [PMID:21726398] - Peng Y,Bartley LE,Canlas P,Ronald PC
OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity. Rice (N Y), 2010. 3(1): p. 36-42 [PMID:21961049] - Chujo T, et al.
OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus. Plant Mol. Biol., 2013. 82(1-2): p. 23-37 [PMID:23462973] - Yazawa T,Kawahigashi H,Matsumoto T,Mizuno H
Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly. PLoS ONE, 2013. 8(4): p. e62460 [PMID:23638091]
|