PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004799.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family G2-like
Protein Properties Length: 329aa    MW: 35688 Da    PI: 8.69
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004799.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.12.3e-2451104155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++W+ +L ++F+ea++q+ G++kA+Pk+i+e+m+v+gL++ h++SHLQkYR+
  Do004799.1  51 KQRIQWSGQLQDKFLEAIDQI-GIDKAVPKKIMEVMNVDGLSRGHIASHLQKYRI 104
                 79*******************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.06E-1748108IPR009057Homeodomain-like
PROSITE profilePS512949.18548107IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2549109IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-2351104IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAMMLLLRSC ILGMARTVRR MAQTTPGSTQ RRTKRMAMLL KRKDDILTQK KQRIQWSGQL  60
QDKFLEAIDQ IGIDKAVPKK IMEVMNVDGL SRGHIASHLQ KYRIYLKRLN EGTQPWWSGM  120
TPSISNKSAS QCFPSGPSSS SANISDGVVF NTSIPFSYGT SASSSANTTN DSSPLATRMR  180
FTSSHSQTSF ASILRTKMLE ANRGIPFDAE NFFDEITNGF SEQVVVDPFN SGSNANSTVI  240
PIGYSDLGSS SNIRPTLSNF QIGNSVVPTQ MPNGGSATGN LPDGGVVDQQ VVGDQVNNSN  300
ELPGGTSETR NGGIDGVDDS FVDSDWGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-1949110364ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004799.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5WM940.0A0A1E5WM94_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2281434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.16e-23response regulator 18