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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do004747.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
C3H |
Protein Properties |
Length: 354aa MW: 37709.2 Da PI: 6.6973 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do004747.1 | genome | Dichan | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 26.8 | 8.9e-09 | 120 | 140 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C++f++ G Ck+Gd C FaHg
Do004747.1 120 ACPDFRK-GGCKRGDACEFAHG 140
7******.*************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MMMMGEGVSV PPWSHHLPVS GVDVGGGDEV EVTPYLLAAL RQYLPCNDAA GLGSADDDEA 60 AAAMAAGVDG FGCDEFRMYE FKVRRCARAR SHDWTECPFA HPGEKARRRD PRKYHYSGTA 120 CPDFRKGGCK RGDACEFAHG VFECWLHPAR YRTQPCKDGT ACRRRVCFFA HTPDQLRVLP 180 PQQTSPRGAG VGASPLADTL MSPPKSPPSE SPPLSPDGAY RRGSWSGVGS PVNEVLASLR 240 QLRLSKANSS PSGGWSGYPA SAVAYGSPTA AGLYSLPSTP MATSTTMGGF MANLEPLDVS 300 FGGGDEEPVQ RVESGRALRD KVFERLSREG AVSGDTSTSG FGGPDVGWVS DLIN
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Functional Description ? help
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Source |
Description |
UniProt | Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT055585 | 0.0 | BT055585.2 Zea mays full-length cDNA clone ZM_BFc0052C06 mRNA, complete cds. |
GenBank | BT085217 | 0.0 | BT085217.2 Zea mays full-length cDNA clone ZM_BFb0336L11 mRNA, complete cds. |
GenBank | EU957563 | 0.0 | EU957563.1 Zea mays clone 1597250 mRNA sequence. |
GenBank | JX428469 | 0.0 | JX428469.1 Zea mays subsp. mays clone pUT3065 C3H47 C3H type transcription factor mRNA, partial cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Mebel AM,Kislov VV,Hayashi M
Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] - Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349]
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