PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004480.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CAMTA
Protein Properties Length: 940aa    MW: 104831 Da    PI: 6.3197
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004480.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1104.19.9e-332193374
        CG-1  3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74
                +e +krwl+++e+++iL n++ +++++e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK
  Do004480.1 21 QEaQKRWLRPTEVCDILSNYKLFSIAAEPPNRPMSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLK 93
                5559********************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143745.26616155IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-3119113IPR005559CG-1 DNA-binding domain
PfamPF038599.9E-282293IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.2E-10357446IPR013783Immunoglobulin-like fold
CDDcd001026.79E-5357445No hitNo description
SuperFamilySSF812967.7E-19358444IPR014756Immunoglobulin E-set
PfamPF018334.6E-9358441IPR002909IPT domain
SuperFamilySSF484031.87E-15536651IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-15550652IPR020683Ankyrin repeat-containing domain
CDDcd002041.14E-11551649No hitNo description
PROSITE profilePS5029717.741557651IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.805590622IPR002110Ankyrin repeat
SuperFamilySSF525405.04E-8759814IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.078763785IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.279764793IPR000048IQ motif, EF-hand binding site
PfamPF006120.013765784IPR000048IQ motif, EF-hand binding site
SMARTSM000150.012786808IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249787811IPR000048IQ motif, EF-hand binding site
PfamPF006124.9E-4789808IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 940 aa     Download sequence    Send to blast
MAENRKFVLP GQPPDISQIL QEAQKRWLRP TEVCDILSNY KLFSIAAEPP NRPMSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKGCKQSFS RVKEEFMQLS NVESPSCSNS  120
ITSQNQMGPQ TMEAAESPIS GQVSDYEDTE SGCHGEMLPT TTKVDNHSFS HHDIARMLDD  180
ANTSSLSRIL FDSVPFNESF TEYSTGFTEP ALHSSFAFLE ANDLEDSSRL QTFTSEVLYT  240
NHLSKEEADA LSFAGIPSSE VNGNRHTEGS IKHPLLKQSS LDLLAIEPTC LKKHDSFSRW  300
MSKELEDVVD LGIKSTSDAF WSNIETVKVP DGSNVLTNEQ LDAYVVSPSL SQDQLFSILD  360
VSPSCSYIGT NTKVSVTGTF LVNKEDVENR NWSCMFGNVE VPAEVLTDGT LRCYAPAHQS  420
GRVPFYVTCS NRVACSEVRE FEYRDPDVQY MEASPSQANG VNEMHLHIRL EKLLTLGPDD  480
HHMLVLSSTN EKYEVMNSIN SLMLDAKWSN QESASANEVV STARDQSLKK LVKEKLHHWL  540
ICKVNDDGKG PNVLCKEGQG VIHLVAALGY DWAIRPIIVA GVNVNFRDAH GWTALHWAAS  600
LGRERTIGVL ITNGAAAGAL TDPTSEFPSG RSPADLASVN GHKGIAGFLA ESALTSHLSA  660
LTIKESKDGA AEISGLPAVE DLTCINPAQI AGEDSHAESL EGSLSAVRKS TQAAARIFQA  720
FRVESFHRKK VVEYGDDDCG LSDEQTLSLI SLKNVKPGQH DTHLHSAAVH IQNKFRGWKG  780
RKEFMIIRQR IVKLQAHVRG HQVRKNYRKV VWSVGIVEKV ILRWRRKSRG LRGFRLEKQL  840
EDPSQIQPAK AEDEYDFLHD GRRQAEARLQ RSLDRVHSMS QYPEAREQYH RLTTCVAEMK  900
QSRMTQDEML NEAAGGDGND FMTGLEDLIC IDDAGMSAIW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004480.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570630.0EU957063.1 Zea mays clone 1581734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793079.10.0calmodulin-binding transcription activator 3-like isoform X1
RefseqXP_025793080.10.0calmodulin-binding transcription activator 2-like isoform X2
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLA0A1E5WIN50.0A0A1E5WIN5_9POAL; Calmodulin-binding transcription activator 1
STRINGSi034054m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein