 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do004237.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
MYB |
| Protein Properties |
Length: 360aa MW: 39370.9 Da PI: 6.9347 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do004237.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W +eEd l+ ++ ++G g +W ++++g++R++k+c++rw++yl
Do004237.1 14 KGPWAPEEDAVLKAYIDEHGAGgNWIQLPHKIGLNRCGKSCRLRWLNYL 62
79*********************************************97 PP
|
| 2 | Myb_DNA-binding | 43.4 | 7.6e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g++T++Ed l+ + G++ W+tIa+ ++ gRt++++k++w++
Do004237.1 69 GSFTEDEDRLICSLYISIGSR-WATIAAQLP-GRTDNDIKNHWNT 111
78*******************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MGRAPCCDKA TVKKGPWAPE EDAVLKAYID EHGAGGNWIQ LPHKIGLNRC GKSCRLRWLN 60
YLRPNIRHGS FTEDEDRLIC SLYISIGSRW ATIAAQLPGR TDNDIKNHWN TKLKRRLLGG 120
GRRPRAETRL QLLTSPTWQH SSFASSALER MQMSMRLHRR HQQAGLDSPA AFTLYNYSNI 180
SAPLWPSPSP SPSPSPAASE SSEMRPRQLP GATSTGYSGL WSHMPTSFSY TGAGVQENMA 240
GTCTPPLSTS TGETITAAGV ESSSSTPTAS SASATFGSMD DELDMLLRQI QCFGDGHIGD 300
EAVDGIDRYY FRAMDHETVD GCFRAMDHEA VDGSVGSWSS CSTPGVDSVV FHDYVQGYNQ
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT063260 | 0.0 | BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds. |
