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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 150aa MW: 15888.7 Da PI: 8.9354 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 37 | 7.5e-12 | 105 | 136 | 2 | 33 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktil 33 pr+rWt+ LH++Fv+ave LGG+e + ti Do004163.1 105 PRMRWTTALHAHFVHAVELLGGHESTFKNTIA 136 9**********************987666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-9 | 102 | 133 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MAATAAAPDL SLHISPPSPP DAGSSGGDGE AYHETEGFFA KPKLCLGLET AAAQQDGQCD 60 IQQQRLHQPI SQIQRFKNNS SAALSGGTTR SRNGSSGGKR SSRAPRMRWT TALHAHFVHA 120 VELLGGHEST FKNTIASIVF TSCSVKLFIN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004163.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982402.1 | 6e-61 | uncharacterized protein LOC101779847 | ||||
TrEMBL | A0A1E5WJR7 | 1e-107 | A0A1E5WJR7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01264.1.p | 7e-52 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3742 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 9e-12 | G2-like family protein |