PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003836.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family YABBY
Protein Properties Length: 258aa    MW: 27559.5 Da    PI: 7.6943
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003836.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY193.69e-60272186170
       YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlksnvekeesasts 95 
                   eq+Cyv+C+ C+tilav vP +s fk+vtvrCGhC++llsvnl+    l aa+++l   +++          ll+e+ ++  +l s +  +++ st 
  Do003836.1  27 EQEQLCYVHCKCCDTILAVGVPCSSFFKTVTVRCGHCSNLLSVNLRGLL-LPAATNQLPFGGQQAllsptsphgLLDEMAFQAPSLPSAEPPSTCVSTI 124
                 679*****************************************99875.3344555555444445566788896666666666666666555555555 PP

       YABBY  96 vssekl..................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 +s ++                   +  ++ ++p+     ++P ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahfP+ihfgl
  Do003836.1 125 TSINNScggnnnasvmsmappvvkPAPQEPQLPKSAAsGNKPTEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 218
                 555444555555556666777777667777788776658*****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.8E-6727218IPR006780YABBY protein
SuperFamilySSF470957.46E-8157211IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-4168210IPR009071High mobility group box domain
CDDcd000847.74E-5172208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMSSVPETFA QLDQHLAPPP PPQQPAEQEQ LCYVHCKCCD TILAVGVPCS SFFKTVTVRC  60
GHCSNLLSVN LRGLLLPAAT NQLPFGGQQA LLSPTSPHGL LDEMAFQAPS LPSAEPPSTC  120
VSTITSINNS CGGNNNASVM SMAPPVVKPA PQEPQLPKSA ASGNKPTEKR QRVPSAYNRF  180
IKDEIQRIKA SNPDITHREA FSAAAKNWAH FPHIHFGLMP DQALKKTSIQ NQEGGECMLF  240
KDGLYAAAAA SGMGIAPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003836.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0357061e-159BT035706.1 Zea mays full-length cDNA clone ZM_BFb0078M02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976365.11e-154protein YABBY 5
SwissprotQ01JG21e-115YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-115YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A1E5W2F00.0A0A1E5W2F0_9POAL; Protein YABBY 5
STRINGSi010859m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-56YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]