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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003836.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | YABBY | ||||||||
Protein Properties | Length: 258aa MW: 27559.5 Da PI: 7.6943 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 193.6 | 9e-60 | 27 | 218 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlksnvekeesasts 95 eq+Cyv+C+ C+tilav vP +s fk+vtvrCGhC++llsvnl+ l aa+++l +++ ll+e+ ++ +l s + +++ st Do003836.1 27 EQEQLCYVHCKCCDTILAVGVPCSSFFKTVTVRCGHCSNLLSVNLRGLL-LPAATNQLPFGGQQAllsptsphgLLDEMAFQAPSLPSAEPPSTCVSTI 124 679*****************************************99875.3344555555444445566788896666666666666666555555555 PP YABBY 96 vssekl..................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s ++ + ++ ++p+ ++P ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWahfP+ihfgl Do003836.1 125 TSINNScggnnnasvmsmappvvkPAPQEPQLPKSAAsGNKPTEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGL 218 555444555555556666777777667777788776658*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.8E-67 | 27 | 218 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.46E-8 | 157 | 211 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.9E-4 | 168 | 210 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 7.74E-5 | 172 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MMSSVPETFA QLDQHLAPPP PPQQPAEQEQ LCYVHCKCCD TILAVGVPCS SFFKTVTVRC 60 GHCSNLLSVN LRGLLLPAAT NQLPFGGQQA LLSPTSPHGL LDEMAFQAPS LPSAEPPSTC 120 VSTITSINNS CGGNNNASVM SMAPPVVKPA PQEPQLPKSA ASGNKPTEKR QRVPSAYNRF 180 IKDEIQRIKA SNPDITHREA FSAAAKNWAH FPHIHFGLMP DQALKKTSIQ NQEGGECMLF 240 KDGLYAAAAA SGMGIAPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003836.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035706 | 1e-159 | BT035706.1 Zea mays full-length cDNA clone ZM_BFb0078M02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976365.1 | 1e-154 | protein YABBY 5 | ||||
Swissprot | Q01JG2 | 1e-115 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-115 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A1E5W2F0 | 0.0 | A0A1E5W2F0_9POAL; Protein YABBY 5 | ||||
STRING | Si010859m | 1e-153 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-56 | YABBY family protein |
Publications ? help Back to Top | |||
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