PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do003674.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

FAR1

Protein Properties

Length: 561aa MW: 63608.3 Da PI: 8.4494

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do003674.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.8	3.2e-22	54	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la Do003674.1 54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPVHNHQLA 140 7******************9***************99988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-20	54	140	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.149	322	358	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.3E-6	328	355	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-6	333	360	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence Send to blast
MDSSQDSQEE RHQRRENGEE TEKTADYGNA LSRKEATEEL LGCVVHSEEE AYRLYCDYGH 60 RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV 120 DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAVGKSG VIDPSASTES HAINGFSDTV 180 EGDTAENSGF RHKWCSAFNK DTFDGGINSS QWGEVSNNIL SGISDENTSL TRFALLLEKV 240 VKDLRRNESE EDFRCSQTAP VRAVKHSTVL KQAAESYTHR IYKLFEAEFL DGCGATSCHE 300 TSSGGNLLRF GITMQGRGSK VWPVALDTST MEITCGCRKF ERMGLLCSHA LKVFTLQNVD 360 TIPEKYVLKR WTKDARRSMY KLAQDDSTQQ ECTEAELAYR NRAMQYAYNL IMKSQELEES 420 RKIFWDSLET GEKALEVFFE MRNMRTQAAK DASNREKKKK KPSKGPNSKK AKQVPAASST 480 GQELIVQTNE HQYQSSQDAQ GNATIGRPYY YQQAFPTAPI QPNQMYMHPN MHTMPLCTPQ 540 DHLSAYAAIR PNSNFGGAKN I

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence Send to blast

MDSSQDSQEE RHQRRENGEE TEKTADYGNA LSRKEATEEL LGCVVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAVGKSG VIDPSASTES HAINGFSDTV  180
EGDTAENSGF RHKWCSAFNK DTFDGGINSS QWGEVSNNIL SGISDENTSL TRFALLLEKV  240
VKDLRRNESE EDFRCSQTAP VRAVKHSTVL KQAAESYTHR IYKLFEAEFL DGCGATSCHE  300
TSSGGNLLRF GITMQGRGSK VWPVALDTST MEITCGCRKF ERMGLLCSHA LKVFTLQNVD  360
TIPEKYVLKR WTKDARRSMY KLAQDDSTQQ ECTEAELAYR NRAMQYAYNL IMKSQELEES  420
RKIFWDSLET GEKALEVFFE MRNMRTQAAK DASNREKKKK KPSKGPNSKK AKQVPAASST  480
GQELIVQTNE HQYQSSQDAQ GNATIGRPYY YQQAFPTAPI QPNQMYMHPN MHTMPLCTPQ  540
DHLSAYAAIR PNSNFGGAKN I

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do003674.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660262.1	0.0	protein FAR1-RELATED SEQUENCE 9 isoform X3
Refseq	XP_022680029.1	0.0	protein FAR1-RELATED SEQUENCE 9 isoform X3
TrEMBL	A0A1E5WN74	0.0	A0A1E5WN74_9POAL; Uncharacterized protein (Fragment)
STRING	Si029002m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-23	FAR1-related sequence 5