PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do003598.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

G2-like

Protein Properties

Length: 378aa MW: 41040.4 Da PI: 6.7789

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do003598.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.2	3.1e-12	37	61	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt eLH+rFv+av+qLGG++ Do003598.1 37 KPRLRWTAELHDRFVDAVAQLGGPD 61 79*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-10	34	63	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-7	37	62	IPR006447	Myb domain, plants
Pfam	PF14379	1.8E-23	166	211	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MFPSSKKQPS TGAVSSNDRS MCGQGDSGGL VLTTDPKPRL RWTAELHDRF VDAVAQLGGP 60 DIIPLIRALF FSLSEIQARE AAQGVWGSYR FSNSCSFRFI GSNLTAKIDD IIVSCIQYFQ 120 LFISIKIFFI SSNTLSNKPH SAMEMQRNVA SSSGVMGRTM NDRSVNVNEA LRIQMEVQRR 180 LHGELEVQKH LQMRVEAQGK YMQSILEKAY QALGSSDCAT WPAGYRSLGG SQAVLDIGGS 240 TSFSSVQDLQ CFYGGSSHMD QLMQMERPMD SFLTLGENFI GSAADKKGPN HCSSSGKSSM 300 IWAGEEQQQA KSGADQLQMG SSTTMEGAID VMDPITGLYE GAMSGDSMGS KGFEGPSSKL 360 EIKSPPQQAP VGSQRVRI

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MFPSSKKQPS TGAVSSNDRS MCGQGDSGGL VLTTDPKPRL RWTAELHDRF VDAVAQLGGP  60
DIIPLIRALF FSLSEIQARE AAQGVWGSYR FSNSCSFRFI GSNLTAKIDD IIVSCIQYFQ  120
LFISIKIFFI SSNTLSNKPH SAMEMQRNVA SSSGVMGRTM NDRSVNVNEA LRIQMEVQRR  180
LHGELEVQKH LQMRVEAQGK YMQSILEKAY QALGSSDCAT WPAGYRSLGG SQAVLDIGGS  240
TSFSSVQDLQ CFYGGSSHMD QLMQMERPMD SFLTLGENFI GSAADKKGPN HCSSSGKSSM  300
IWAGEEQQQA KSGADQLQMG SSTTMEGAID VMDPITGLYE GAMSGDSMGS KGFEGPSSKL  360
EIKSPPQQAP VGSQRVRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do003598.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728054	0.0	KJ728054.1 Zea mays clone pUT6200 G2-like transcription factor (GLK34) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025810576.1	0.0	myb family transcription factor APL-like
TrEMBL	A0A1E5V2F8	0.0	A0A1E5V2F8_9POAL; Myb family transcription factor APL
STRING	Si006865m	1e-179	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2504	38	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-50	G2-like family protein