PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003557.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 433aa    MW: 46840.4 Da    PI: 8.136
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003557.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.33.3e-07145166122
         AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                 s+y+GV++++++grW+++I+ +
  Do003557.1 145 SQYRGVTFYRRTGRWESHIWAY 166
                 78*****************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-5145184IPR016177DNA-binding domain
SMARTSM003801.1E-7146189IPR001471AP2/ERF domain
CDDcd000184.01E-12218263No hitNo description
SuperFamilySSF541711.83E-6218262IPR016177DNA-binding domain
SMARTSM003805.7E-13219267IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MATSDSGSSE SSVLNAEASG GGAAPAEEGS SSTPPPPAVL EFSILRSESD AAGADDDDDA  60
TPSPPRQQQQ PQLITRELFP AAAGPPRPPP QHWAELGFFR AEPPRPQPDI RILPHPHPHA  120
TPPAPPPVQP QXAKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWAYDRAA IKFRGVDADI  180
NFNLSDYEDD MKQMKSLSKE EFVHVLRRXS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG  240
KKAYDKAAIK CNGREAVTNF EPSTYEGELL TEVGTEGADV DLNLSISQPA SQSPKRDKNS  300
LGLQLHNGSF EGSELKRTKI DSPSELAGCP HRFPLMTEHP AIWPAQSHPF FANNESASRD  360
LNRRPEGGTV GGAPSWAWKV TAPPPTLPLP LFSSSSSSAA ASSGFSNTTT TAAPATPPAS  420
LQFDPPSSSS HPR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003557.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806429.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotB8AXC31e-161AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A1E5V1X40.0A0A1E5V1X4_9POAL; Ethylene-responsive transcription factor RAP2-7
STRINGPavir.J23348.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.17e-62related to AP2.7