PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003461.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YA
Protein Properties Length: 270aa    MW: 28818.2 Da    PI: 9.7578
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003461.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA89.35.1e-28180246158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk..........ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 +ep+YVNaKQy++Il+RRq+Rak+e ekk          l +   +pylheSRh+hA+rR+Rg+gGrF
  Do003461.1 180 EEPVYVNAKQYHGILRRRQSRAKAELEKKvvktrklaenL-HLILQPYLHESRHQHAMRRARGNGGRF 246
                 69***************************88888877754.66779*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.4E-31178249IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.8179249IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.0E-27181246IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860184204IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MESRPGGTNL VEPRGQGAAL PSGGAAMQPW WTNSGAGFGA VSPAVVAPGS GAGISLSSSP  60
VGGSGGTGAA KGAASDESSE DSRRSGEPKD GSAGQEKNHA TSQMPALVSE YLVPYSQLEL  120
NQSIVRTTSL WTLFIASAAY QYPDPYYAGM VPPYGTQAVA HFQVPGLAHS RMPLPLEVSE  180
EPVYVNAKQY HGILRRRQSR AKAELEKKVV KTRKLAENLH LILQPYLHES RHQHAMRRAR  240
GNGGRFLNTK KSDNDTHNGN TEVVQLFQSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19180254266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003461.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0638031e-107BT063803.1 Zea mays full-length cDNA clone ZM_BFc0109B09 mRNA, complete cds.
GenBankEU9620761e-107EU962076.1 Zea mays clone 240068 nuclear transcription factor Y subunit A-1 mRNA, complete cds.
GenBankKJ7282931e-107KJ728293.1 Zea mays clone pUT6573 CCAAT-HAP2 transcription factor (CA2P16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795066.11e-144nuclear transcription factor Y subunit A-9-like
TrEMBLA0A1E5VHL20.0A0A1E5VHL2_9POAL; Nuclear transcription factor Y subunit A-9
STRINGPavir.J08102.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-38nuclear factor Y, subunit A9