PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003457.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 747aa    MW: 79840.9 Da    PI: 6.8176
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003457.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07310330526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  Do003457.1 310 PCPDFRK-GVCRRGDMCEYAHG 330
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002480.9592122IPR002110Ankyrin repeat
CDDcd002042.03E-792170No hitNo description
PROSITE profilePS5029716.33592167IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.34E-1493170IPR020683Ankyrin repeat-containing domain
PfamPF136378.9E-1093151No hitNo description
Gene3DG3DSA:1.25.40.202.4E-1694171IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.716127162IPR002110Ankyrin repeat
SMARTSM002480.027127159IPR002110Ankyrin repeat
SMARTSM003561.1E-5305331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4309332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375310332IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4310330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4338368IPR000571Zinc finger, CCCH-type
SMARTSM0035637340363IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MMNSMPISAS PAAGIDGGAV AAGMPRKNAT AAAAAVAEMA RHLTVETDDA FAGLLELAAD  60
DDAEGLRRAL EREPPAAADE AGLWYGRRKV LEHLTPLMVA ATYGSLAALR LLVSLPSVDV  120
NRRSSTDGTT ALHCAASGGS RTAVEAVKML LGAGADADAT DDSGRRPADV ISVPPKMFDA  180
KFALQDLLGC PKSEHGMLRV VTRSTNSISS PISSPTAEDA RSPSAAAMMM TKFADLPRVA  240
TSEKKEYPVD PSLPDIKNSI YASDEFRMYS FKIRPCSRAY SHDWTECPFV HPGENARRRD  300
PRKYHYSCVP CPDFRKGVCR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT SCNRRVCFFA  360
HTTDELRPLY VSTGSAVPSP RASAAMEMAA AMGLMPGSPS SVSAVMSPFT PPMSPSGNGM  420
PPSLGWQQPN VPTLHLPGSS LQSSRLRTSL SARDMPADDY SLMQDLDSQL MNDLCYSRLS  480
SSTGNHSART KSLNPSNLDD LFSAEMVSSP RYSNADQGAI FSPSHKAAIL NQFQQQQQAL  540
LSPINTGVYS PKAVDNQQLP SHSSLLQASL GISSPGRMSP RCVESGSPMN SHLAAALVQR  600
EKQQQTMRSL SSRDLGPSAA RASALVGSPL SSSWSKWGSP SGTPDWGVNG EELGKLRRSS  660
SFELRSGGDD PDLSWVHTLV KESPPEKQVT MAESINSVGP SPLMPPSMNN GDGSGMNTQL  720
DGRDQAAVIG ALLEQMQLDQ QIGSLAT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003457.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794600.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1E5VHJ30.0A0A1E5VHJ3_9POAL; Zinc finger CCCH domain-containing protein 24
STRINGGRMZM2G180979_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]