PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003424.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C3H | ||||||||
Protein Properties | Length: 166aa MW: 18131.5 Da PI: 8.3782 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.4e-07 | 82 | 100 | 9 | 27 |
GGGTS--TTTTT-SS-SSS CS zf-CCCH 9 fartGtCkyGdrCkFaHgp 27 f+ GtCkyGd+C++ H++ Do003424.1 82 FMLQGTCKYGDSCRYFHPK 100 8999*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 2.4E-6 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 4.72E-16 | 4 | 48 | No hit | No description |
Pfam | PF06220 | 5.0E-11 | 5 | 37 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 11.657 | 60 | 101 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 82 | 98 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-5 | 82 | 100 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MPLGKYYCDY CDKQFQDTPA ARKRHLQGTQ HQRARALWYD SVRHQDQHGG ASSLLLPDGT 60 LAKGVCHHFV RTAALDFDAN PFMLQGTCKY GDSCRYFHPK PGGANPSLAA PGKGLGQKFD 120 IGNVSFLCHV FTGNVLGAHT SWGNLPPSLQ PPPEGGYPPL PLVDWG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003424.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727992 | 1e-77 | KJ727992.1 Zea mays clone pUT6112 C3H transcription factor (C3H42) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967856.1 | 5e-87 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 3e-57 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A1E5UQJ8 | 1e-119 | A0A1E5UQJ8_9POAL; Zinc finger CCCH domain-containing protein 3 | ||||
STRING | Pavir.Eb00973.1.p | 2e-87 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12617 | 23 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 2e-24 | C3H family protein |
Publications ? help Back to Top | |||
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