PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003251.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 519aa MW: 57379.4 Da PI: 5.8178 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.2 | 1.3e-31 | 125 | 178 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Do003251.1 125 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 178 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.627 | 121 | 181 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 121 | 179 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.3E-14 | 123 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-22 | 125 | 180 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.0E-9 | 126 | 177 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MVEQYKMVAR EEQVMRELKD KGVLVEILED DEERLINNKL LDLNEDFDEE TEEGEVGGDE 60 EDEGEEGDDG GSTTDVGGSG SSSNNSSTNN NSESKKGDTK GGDKSEGSGE QRVPSVRQYN 120 RSKMPRLRWT PDLHMAFVHA VERLGGQERA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK 180 LDQDGRPKGA ISSAYSPMDF HFMRGDGRFH EMSFFQRAAA LSSKPEHGSF FASRNCSAPE 240 LSRIYGLLQH RQAPQTFDFR NSRNHEWASS QREAIISRKD VTVTEPSTAP HQIQTHPLAA 300 SVALRSERRW WPFTDAAAAA TIGERRVETG TDASFANSIG SSSRPHLWAM STVVSGDRRL 360 PFRWRPGGSG RDVVAGYTSN SAKITTRSSD PVVIDDEALD AQQLEKHVEA RDSVMPAYKA 420 CRKRSSPVEA QDGTADLQLS LSPTTVMEAK KRKTTALSDQ EVMDNSELSI SLSLSPPAAA 480 SIQKQQQERT RRSNDSGSSD EAILGQSTLD LTMSIRALE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 126 | 180 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003251.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824416.1 | 0.0 | uncharacterized protein LOC112899951 isoform X2 | ||||
TrEMBL | A0A1E5V647 | 0.0 | A0A1E5V647_9POAL; Uncharacterized protein | ||||
STRING | Si016955m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42660.1 | 2e-34 | G2-like family protein |