 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do003038.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
bHLH |
Protein Properties |
Length: 253aa MW: 27282.8 Da PI: 7.9032 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do003038.1 | genome | Dichan | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 35.5 | 1.8e-11 | 93 | 138 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+r+N f Lr +P+ +++ a+ L Av YI +L
Do003038.1 93 SHVEAERQRRERLNRLFCDLRAAVPTV-----SRMDRASLLSDAVAYIAEL 138
799***********************6.....49**************998 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MDQLVWPASF CGPPSPASFF SAVGNHQYPA LEFQSCDDVA DQWLAAGDDV LNENDDSEPR 60 DAGANPPSSA PPLAKRRKRG RKAGPRTARP TISHVEAERQ RRERLNRLFC DLRAAVPTVS 120 RMDRASLLSD AVAYIAELRG RVVQLEEAEA EARRTIAASV SRGAPEQENI ALEARMVGRA 180 EAALRLTTTA SRHAPARLMA ALRALDLPVQ HACVCRVGGV TVQDVVVDVP SAGLRGEGRL 240 RAALLHVSLQ ESG
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_B | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_E | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_F | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_G | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_I | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_M | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_N | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FP097341 | 6e-50 | FP097341.1 Phyllostachys edulis cDNA clone: bphylf031p01, full insert sequence. |