PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002984.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 360aa    MW: 38191.1 Da    PI: 7.4973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002984.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.2e-1098123127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC+ f++ GtC+y  +C+FaHg+
  Do002984.1  98 FKTKLCCKFRA-GTCPYVTNCNFAHGM 123
                 69*********.*************95 PP
2zf-CCCH18.63.3e-06176201126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 yk + C+ f+    C+yGd+C+F H+
  Do002984.1 176 YKGRHCKKFYTEEGCPYGDSCTFLHD 201
                 78888********************7 PP
3zf-CCCH43.45.7e-14239264126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  Do002984.1 239 WKTRICNKWEMTGYCPFGSKCHFAHG 264
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-1495130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-895128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.02897124IPR000571Zinc finger, CCCH-type
SMARTSM003560.001497123IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-798123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-9175203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7175203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929175203IPR000571Zinc finger, CCCH-type
SMARTSM003560.2175202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-17234268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-10235269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422238266IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9238265IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11239264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWT NAAPSAAADS GIWATEDDYR QWSADPGYGD RNPSSRAGSE  60
QPPPGKKARG GGAGAGGGSD TGGGSSTSKS RAIGKMFFKT KLCCKFRAGT CPYVTNCNFA  120
HGMEELRKPP PNWQEIVAAH EEATEQREEH QIPIMTSGSV VAGDGGSGGS QGGRAYKGRH  180
CKKFYTEEGC PYGDSCTFLH DEQSKARESV AISLSPTVGG GGYNAAAANG SMVQKPSNWK  240
TRICNKWEMT GYCPFGSKCH FAHGAAELHK YGGGLVDIDS RDGTSTPDSK QAGASAKVPA  300
DSTAVSTTIP PHADVYHLGI QSQRPTIVSQ RSGQVQRPIQ KWKGPDKISR IYGDWIDENE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002984.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321178.10.0zinc finger CCCH domain-containing protein 56 isoform X2
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1E5UV640.0A0A1E5UV64_9POAL; Zinc finger CCCH domain-containing protein 56
STRINGPavir.Fb00417.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-108C3H family protein