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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Do002859.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family |
Trihelix |
Protein Properties |
Length: 256aa MW: 26884.1 Da PI: 4.537 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do002859.1 | genome | Dichan | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 38.1 | 4e-12 | 11 | 45 | 52 | 87 |
trihelix 52 ekwenlnkrykkikegekkrtsessstcpyfdqlea 87
+kwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
Do002859.1 11 DKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 45
8******************8.99***********85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MRNMDEADWV DKWENINKYF KKVKESNKKR PEDSKTCPYY HQLDALYRSK ALASSGAGAV 60 GAAAPPPPRL EQAGVTVLAA VPLSQTAPHA EHGGKDRSNG NGCASRGSSD NGGSSGGMQT 120 QPSNGGVAAR FTVVEGGGGN GVATNKQEGI ITKETAAMEP RPQPVSMNDS YVNDTMDSDS 180 SMDDDDEDDF DDDDEEEGNA VGGGNSKMQY EIQFQQRQQQ IQSSVVRPNA SGGAGSGPGP 240 GPAATTSGSF LTMVHH
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC216760 | 4e-54 | AC216760.1 Oryza minuta clone OM__Ba0212D22, complete sequence. |
GenBank | AC217202 | 4e-54 | AC217202.1 Oryza punctata clone OP__Ba0068C08, complete sequence. |
GenBank | AC226072 | 4e-54 | AC226072.1 Oryza minuta clone OM__Ba0051J08, complete sequence. |
GenBank | AC232902 | 4e-54 | AC232902.1 Oryza officinalis clone OO__Ba0128B10, complete sequence. |