 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do002859.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
Trihelix |
| Protein Properties |
Length: 256aa MW: 26884.1 Da PI: 4.537 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do002859.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 38.1 | 4e-12 | 11 | 45 | 52 | 87 |
trihelix 52 ekwenlnkrykkikegekkrtsessstcpyfdqlea 87
+kwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
Do002859.1 11 DKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 45
8******************8.99***********85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MRNMDEADWV DKWENINKYF KKVKESNKKR PEDSKTCPYY HQLDALYRSK ALASSGAGAV 60
GAAAPPPPRL EQAGVTVLAA VPLSQTAPHA EHGGKDRSNG NGCASRGSSD NGGSSGGMQT 120
QPSNGGVAAR FTVVEGGGGN GVATNKQEGI ITKETAAMEP RPQPVSMNDS YVNDTMDSDS 180
SMDDDDEDDF DDDDEEEGNA VGGGNSKMQY EIQFQQRQQQ IQSSVVRPNA SGGAGSGPGP 240
GPAATTSGSF LTMVHH
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC216760 | 4e-54 | AC216760.1 Oryza minuta clone OM__Ba0212D22, complete sequence. |
| GenBank | AC217202 | 4e-54 | AC217202.1 Oryza punctata clone OP__Ba0068C08, complete sequence. |
| GenBank | AC226072 | 4e-54 | AC226072.1 Oryza minuta clone OM__Ba0051J08, complete sequence. |
| GenBank | AC232902 | 4e-54 | AC232902.1 Oryza officinalis clone OO__Ba0128B10, complete sequence. |
