|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Do002847.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
Family |
Trihelix |
Protein Properties |
Length: 161aa MW: 16965.2 Da PI: 12.3539 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Do002847.1 | genome | Dichan | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 35.6 | 2.4e-11 | 2 | 70 | 22 | 86 |
trihelix 22 rrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
r+g+l ++ W++v++++ + +s +qC++k+e+l+kry++++ ++ +r+++ ++++f l+
Do002847.1 2 RKGNLWAANWDDVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWQFFPLLH 70
667888899********998888788899*************************98443..47****9886 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 161 aa
Download sequence Send
to blast |
LRKGNLWAAN WDDVANAVTA RCGRFPTATP KSGVQCRHKI EKLRKRYRAE RSRSAGRSKG 60 PKWQFFPLLH DLAGGGVPAP AQTPSSRSRP RGRGGGGEGG AEAARGRSRG GGGEGGARAG 120 GAGAARGKRA TRRDAMELMG GRRRVMSKRV RHGGPGLSEG E
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT043326 | 1e-101 | BT043326.1 Zea mays full-length cDNA clone ZM_BFc0158M15 mRNA, complete cds. |
GenBank | EU942717 | 1e-101 | EU942717.1 Zea mays clone 1532102 mRNA sequence. |
GenBank | EU965848 | 1e-101 | EU965848.1 Zea mays clone 289347 hypothetical protein mRNA, complete cds. |
GenBank | KJ727856 | 1e-101 | KJ727856.1 Zea mays clone pUT5902 trihelix transcription factor (THX28) gene, partial cds. |