PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002796.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family YABBY
Protein Properties Length: 169aa    MW: 19202.2 Da    PI: 8.8221
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002796.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY50.11.1e-15549446
       YABBY  4 fssseqvCyvqCnfCntila..vsvPstslfkvvtvrCGhCtsll 46
                 s+se++Cyv+C++Cnt+la  v vP + l+ +vtv+CGhC +l 
  Do002796.1  5 SSQSEHLCYVRCTYCNTVLAlqVGVPCKRLMDTVTVKCGHCNNLS 49
                6789**************9744778*****************984 PP
2YABBY852.1e-2691148102159
       YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                 +++++e +pr+p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aakn
  Do002796.1  91 PTSTHEASPRMPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKN 148
                 56778899*************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.7E-427148IPR006780YABBY protein
SuperFamilySSF470952.36E-698147IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDLVSSQSEH LCYVRCTYCN TVLALQVGVP CKRLMDTVTV KCGHCNNLSY LSPRPPMVQP  60
LSPTDHPLGP FQCQGPCNDC RRNQPLPLAS PTSTHEASPR MPFVVKPPEK KHRLPSAYNR  120
FMREEIQRIK AAKPDIPHRE AFSMAAKNER AKEQVIESFD IFKQIERSI
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002796.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4702680.0AB470268.1 Sorghum bicolor SbDL mRNA for DL related protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797472.11e-111protein DROOPING LEAF isoform X1
SwissprotQ76EJ03e-97YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A1E5USC81e-122A0A1E5USC8_9POAL; Protein DROOPING LEAF
STRINGPavir.Ia04690.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-48YABBY family protein