PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 276aa MW: 31147.5 Da PI: 8.7438 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.1 | 1.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s Do002660.1 9 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 68.8 | 1.8e-23 | 86 | 155 | 1 | 70 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 yq++ g+sl+++++e++q+ l+ Lk+ ++nL++e+R+++GedL+sL++ eL+ Leq+++++lk++R +K Do002660.1 86 YQQAIGTSLWNEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDSLEFDELRGLEQNVDTALKEVRHRKA 155 67888999*************************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.59 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-32 | 2 | 110 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.26E-40 | 2 | 95 | No hit | No description |
PRINTS | PR00404 | 3.7E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.8E-17 | 97 | 214 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.373 | 99 | 220 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP 60 GTESVPILLL HDLLNFTLIK TIFDRYQQAI GTSLWNEQYE NMQRTLSHLK DINRNLRTEI 120 RQRMGEDLDS LEFDELRGLE QNVDTALKEV RHRKARTNPK LLVDLDLSLL HADVLFRSVH 180 ISCTLYHVIS TQTETYKKKV KHSYEAYKNL QQELGMREDP AFGFVDNTGA GGWDGGAVAL 240 GGGSGGGAAD MYAFRVVPSQ PNLHGMAYGS HDLRLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-16 | 1 | 65 | 1 | 65 | MEF2C |
5f28_B | 1e-16 | 1 | 65 | 1 | 65 | MEF2C |
5f28_C | 1e-16 | 1 | 65 | 1 | 65 | MEF2C |
5f28_D | 1e-16 | 1 | 65 | 1 | 65 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018998 | 1e-85 | BT018998.1 Zea mays clone Contig486.F mRNA sequence. | |||
GenBank | BT039988 | 1e-85 | BT039988.1 Zea mays full-length cDNA clone ZM_BFc0056L03 mRNA, complete cds. | |||
GenBank | EU965657 | 1e-85 | EU965657.1 Zea mays clone 287776 MADS-box transcription factor 16 mRNA, complete cds. | |||
GenBank | EU966237 | 1e-85 | EU966237.1 Zea mays clone 292756 MADS-box transcription factor 16 mRNA, complete cds. | |||
GenBank | KJ726948 | 1e-85 | KJ726948.1 Zea mays clone pUT3494 MADS transcription factor (MADS11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812646.1 | 1e-151 | MADS-box transcription factor 16 | ||||
Swissprot | Q944S9 | 1e-129 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | A0A1E5V2E9 | 0.0 | A0A1E5V2E9_9POAL; MADS-box transcription factor 16 | ||||
STRING | Si007221m | 1e-150 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 7e-55 | MIKC_MADS family protein |