PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002628.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 173aa    MW: 19007.2 Da    PI: 9.4614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002628.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.14.1e-07830224
         NAM  2 ppGfrFhPtdeelvveyLkkkve 24
                ppGf+F P+de+lvv++L++k+ 
  Do002628.1  8 PPGFHFFPSDEDLVVHFLRRKLL 30
                9*******************986 PP
2NAM59.41.2e-183810453128
         NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +  ++wyfFs++++        +r+  +gyW+  g d++v+s +g  vglkktL+f +g+ +kg kt+W+mhey+l
  Do002628.1  38 QAGNQWYFFSHAAQ--------SRTSPNGYWNPIGADETVTS-NGCIVGLKKTLIFCTGEPSKGFKTNWIMHEYHL 104
                 35689*****9865........678899**************.999*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.6951128IPR003441NAC domain
SuperFamilySSF1019417.72E-344109IPR003441NAC domain
PfamPF023652.0E-208104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGGATNIPPG FHFFPSDEDL VVHFLRRKLL ILQGTALQAG NQWYFFSHAA QSRTSPNGYW  60
NPIGADETVT SNGCIVGLKK TLIFCTGEPS KGFKTNWIMH EYHLQDEGYN VSGSSTSSSS  120
SSSRKSQRKR VHSSTVSDIA YPVASQQSAA YTHVTTKWCT KPINNLCRSP TTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-22610416142NO APICAL MERISTEM PROTEIN
1ut4_B2e-22610416142NO APICAL MERISTEM PROTEIN
1ut7_A2e-22610416142NO APICAL MERISTEM PROTEIN
1ut7_B2e-22610416142NO APICAL MERISTEM PROTEIN
3swm_A2e-22610419145NAC domain-containing protein 19
3swm_B2e-22610419145NAC domain-containing protein 19
3swm_C2e-22610419145NAC domain-containing protein 19
3swm_D2e-22610419145NAC domain-containing protein 19
3swp_A2e-22610419145NAC domain-containing protein 19
3swp_B2e-22610419145NAC domain-containing protein 19
3swp_C2e-22610419145NAC domain-containing protein 19
3swp_D2e-22610419145NAC domain-containing protein 19
4dul_A2e-22610416142NAC domain-containing protein 19
4dul_B2e-22610416142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002628.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952810.12e-75NAC domain-containing protein 104
SwissprotQ8GWK62e-24NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1E5VI721e-127A0A1E5VI72_9POAL; Uncharacterized protein
STRINGSi018368m9e-75(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-26xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]