PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Do002520.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 850aa MW: 97069.3 Da PI: 8.9697

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do002520.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	306.6	5.8e-94	235	582	1	350
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+avs ++++la+ +L+ +++++s +gd +qRla++++e L+arla+++ +l+++l +++ + + l++++l + P+l+ h N Do002520.1 235 LRTLLIHCAQAVSVNNQTLASDILNIIRQNCSISGDGTQRLASCLVECLEARLAGTGGQLFQKLVSKSRN---AVGILKVYQLCLAANPFLRAFHYFSN 330 6789*******************************************************999998887...99******************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++Il+ +g+ +vHiiDf+i +G+QWp+L++++a+R++gpp++RiTg+++p++g ++ +tg+rLa++A+ ++vpfe++ ++++++e++ +e++++ Do002520.1 331 KTILDVSKGKPKVHIIDFGICYGFQWPSLFEQFAKREDGPPKVRITGIEHPQPGfrPDQMNTHTGQRLADYASMFNVPFEYRGILSSKWETIPIEDFHI 429 ***************************************************88888899******************************** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 + +++l+Vn+ +++++l de+vs++s+r++vL++++ ++Pkv+++ + +++++ Fl+rf e +++ysa fd l++++pr++e+r+ vEr + + ++ Do002520.1 430 EGDDVLIVNCLYRMKNLGDETVSVNSARNRVLNTIRMMNPKVFIHGVVNGSYSTPYFLTRFKEVMYHYSASFDILDKTIPRDNEARMIVERDIYRCALL 528 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350 nv+aceg++r+er e+++kW++r +aG+++++l+ +++k + ++ ++++d y Do002520.1 529 NVIACEGSDRIERPESYKKWKSRNLKAGLEQLQLNPDIVKVTRDMVGQYHKD-YV 582 ***********************************************966.65 PP
2	GRAS	224.6	4.9e-69	591	832	71	311
GRAS 71 eknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167 ++n++ l++++l ++P+++ + aN++I + ++g+ rvHi+Df+i G+QWp+L+++La+R++gpp++RiTg+++p++g +e++++ g+rLa+ Do002520.1 591 RRNVAGILKVFHLCMAICPFMRAPYYFANKTIIDVTKGKPRVHIVDFGICFGFQWPSLFEQLAKREGGPPKVRITGIDQPQPGfrPNESTKNAGQRLAD 689 45578889999999*********************************************************************************** PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +A+ ++vpfe++ +++++e++++e+++++++++l+Vn++++l++l de++s++s+r++vL++++ ++P v+v+ + +++++ Fl+rf e ++ ysa Do002520.1 690 YARMFNVPFEYQG-ISSKWETIKIEDFNIEQDDVLIVNCIYRLKNLGDETLSINSARNRVLNTIRMMKPIVFVHGVMNGSYSTPFFLTRFKEVMYNYSA 787 *********.7******************************************************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311 lfd l++++pr++e r+ +Er + i nv+ac+g+er++r ++ Do002520.1 788 LFDILDKTVPRDNEIRMILERDIYLSVILNVIACKGSERIARGQR 832 **************************************99765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.86	209	587	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-91	235	582	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-66	591	832	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	39.22	597	850	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence Send to blast
MQEDSDDKVK LHHGECALRA MEEPFYRLLG QNSPPYPEVL SLCSCDNLNN LDGCINKSSG 60 QSCSSCSIAH DSCNHHSNHK LQPFEAPWSL SDIVKETKHF TQATPNMELG LNVDGLSIAE 120 KRSRDYQSLQ VNVAYTSKQA SSEVQCQNYP RTEDFYLLEG RSSKQLAISF SGPTRDEMFD 180 KVLLFSEHKP MDEGIVLQEM MTNKSTRISQ NDQGRISARQ KTRGKKQQKK EVVDLRTLLI 240 HCAQAVSVNN QTLASDILNI IRQNCSISGD GTQRLASCLV ECLEARLAGT GGQLFQKLVS 300 KSRNAVGILK VYQLCLAANP FLRAFHYFSN KTILDVSKGK PKVHIIDFGI CYGFQWPSLF 360 EQFAKREDGP PKVRITGIEH PQPGFRPDQM NTHTGQRLAD YASMFNVPFE YRGILSSKWE 420 TIPIEDFHIE GDDVLIVNCL YRMKNLGDET VSVNSARNRV LNTIRMMNPK VFIHGVVNGS 480 YSTPYFLTRF KEVMYHYSAS FDILDKTIPR DNEARMIVER DIYRCALLNV IACEGSDRIE 540 RPESYKKWKS RNLKAGLEQL QLNPDIVKVT RDMVGQYHKD YVLYRKLMAK RRNVAGILKV 600 FHLCMAICPF MRAPYYFANK TIIDVTKGKP RVHIVDFGIC FGFQWPSLFE QLAKREGGPP 660 KVRITGIDQP QPGFRPNEST KNAGQRLADY ARMFNVPFEY QGISSKWETI KIEDFNIEQD 720 DVLIVNCIYR LKNLGDETLS INSARNRVLN TIRMMKPIVF VHGVMNGSYS TPFFLTRFKE 780 VMYNYSALFD ILDKTVPRDN EIRMILERDI YLSVILNVIA CKGSERIARG QRVTRNGSYE 840 TKRRALSSSH

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence Send to blast

MQEDSDDKVK LHHGECALRA MEEPFYRLLG QNSPPYPEVL SLCSCDNLNN LDGCINKSSG  60
QSCSSCSIAH DSCNHHSNHK LQPFEAPWSL SDIVKETKHF TQATPNMELG LNVDGLSIAE  120
KRSRDYQSLQ VNVAYTSKQA SSEVQCQNYP RTEDFYLLEG RSSKQLAISF SGPTRDEMFD  180
KVLLFSEHKP MDEGIVLQEM MTNKSTRISQ NDQGRISARQ KTRGKKQQKK EVVDLRTLLI  240
HCAQAVSVNN QTLASDILNI IRQNCSISGD GTQRLASCLV ECLEARLAGT GGQLFQKLVS  300
KSRNAVGILK VYQLCLAANP FLRAFHYFSN KTILDVSKGK PKVHIIDFGI CYGFQWPSLF  360
EQFAKREDGP PKVRITGIEH PQPGFRPDQM NTHTGQRLAD YASMFNVPFE YRGILSSKWE  420
TIPIEDFHIE GDDVLIVNCL YRMKNLGDET VSVNSARNRV LNTIRMMNPK VFIHGVVNGS  480
YSTPYFLTRF KEVMYHYSAS FDILDKTIPR DNEARMIVER DIYRCALLNV IACEGSDRIE  540
RPESYKKWKS RNLKAGLEQL QLNPDIVKVT RDMVGQYHKD YVLYRKLMAK RRNVAGILKV  600
FHLCMAICPF MRAPYYFANK TIIDVTKGKP RVHIVDFGIC FGFQWPSLFE QLAKREGGPP  660
KVRITGIDQP QPGFRPNEST KNAGQRLADY ARMFNVPFEY QGISSKWETI KIEDFNIEQD  720
DVLIVNCIYR LKNLGDETLS INSARNRVLN TIRMMKPIVF VHGVMNGSYS TPFFLTRFKE  780
VMYNYSALFD ILDKTVPRDN EIRMILERDI YLSVILNVIA CKGSERIARG QRVTRNGSYE  840
TKRRALSSSH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-35	239	841	8	329	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do002520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685405.1	0.0	scarecrow-like protein 9
TrEMBL	A0A368SHN0	0.0	A0A368SHN0_SETIT; Uncharacterized protein
STRING	Si040221m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11788	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-127	GRAS family protein