PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25557.3 Da PI: 9.1562 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.7 | 8.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaeva+++fs++gklye++s Do002420.1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALVVFSPRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 65.6 | 1.8e-22 | 78 | 170 | 8 | 99 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s +++++ e+ + +++ L k++e L+ +R+llGe+Le++s++eL++Le +Leksl iR K++ll eq+++l +ke l+++n++Lr+k + Do002420.1 78 SsKTAQDIEQVKADAEGLAKKLEALEAYKRKLLGEKLEECSIEELHSLEVKLEKSLHCIRGIKTQLLEEQVNKLMEKETTLRKNNEDLREKCK 170 3378889999********************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.441 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-32 | 3 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.88E-43 | 3 | 75 | No hit | No description |
Pfam | PF00319 | 2.4E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.3E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-23 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.539 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000060 | Biological Process | protein import into nucleus, translocation | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALVVFSP RGKLYEFASG 60 SVQKTIERYR TNTKDNVSSK TAQDIEQVKA DAEGLAKKLE ALEAYKRKLL GEKLEECSIE 120 ELHSLEVKLE KSLHCIRGIK TQLLEEQVNK LMEKETTLRK NNEDLREKCK NQPPLLLTHA 180 PAAVVTVEDN RPEQNDDAMD VETELYIGLP GRDHRRNKAA AVRLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-19 | 1 | 85 | 1 | 84 | MEF2C |
5f28_B | 7e-19 | 1 | 85 | 1 | 84 | MEF2C |
5f28_C | 7e-19 | 1 | 85 | 1 | 84 | MEF2C |
5f28_D | 7e-19 | 1 | 85 | 1 | 84 | MEF2C |
6byy_A | 7e-19 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 7e-19 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 7e-19 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 7e-19 | 1 | 85 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00076 | ChIP-chip | Transfer from AT2G45660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960774 | 0.0 | EU960774.1 Zea mays clone 228490 MADS-box transcription factor 56 mRNA, complete cds. | |||
GenBank | EU962504 | 0.0 | EU962504.1 Zea mays clone 243238 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985919.1 | 1e-145 | MADS-box transcription factor 50 isoform X2 | ||||
Refseq | XP_004985920.1 | 1e-145 | MADS-box transcription factor 50 isoform X2 | ||||
Refseq | XP_012698462.1 | 1e-145 | MADS-box transcription factor 50 isoform X2 | ||||
Swissprot | Q9XJ60 | 1e-115 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A2T7CIE0 | 1e-138 | A0A2T7CIE0_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G171365_P01 | 1e-126 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 1e-72 | AGAMOUS-like 20 |