PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002362.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 308aa    MW: 33731.8 Da    PI: 9.0291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002362.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.1e-52191511129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhP+dee++++yL +kv ++ +++  +i e+d++k+ePw+Lp k+k +ekewyfF ++d+ky+tg r+nrat++gyWkatgkdke+++++ ++
  Do002362.1  19 LPPGFRFHPRDEEIITFYLMPKVLQRGFTC-AAIGEADLNKTEPWELPGKAKMGEKEWYFFYRKDRKYPTGIRANRATEAGYWKATGKDKEIYRATASA 116
                 79**************************99.88***************99999*****************************************84444 PP

         NAM 100 .....vglkktLvfykgrapkgektdWvmheyrle 129
                      +g+kktLvfykgrap+gekt+Wvmhe+rle
  Do002362.1 117 alpmlIGMKKTLVFYKGRAPRGEKTNWVMHEFRLE 151
                 67888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6013187IPR003441NAC domain
PROSITE profilePS5100556.41619187IPR003441NAC domain
PfamPF023654.1E-2720150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGDQQQQQQG MSVGDSLELP PGFRFHPRDE EIITFYLMPK VLQRGFTCAA IGEADLNKTE  60
PWELPGKAKM GEKEWYFFYR KDRKYPTGIR ANRATEAGYW KATGKDKEIY RATASAALPM  120
LIGMKKTLVF YKGRAPRGEK TNWVMHEFRL EGSGKLPCPT SSSTSTAAMK SLSISKDEWV  180
VCRVFHKTTR IKKEHVHAPS SYTMAMASGD IDQSTIPMPI SMQFPMLQDF TMDPTASYYS  240
IASGGSSSMP PVMPPMAGMG NAGLPANGAL FGNLMAPALP VSFYPQMGIG ACATGIDGFM  300
ATPESGPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-481719315171NO APICAL MERISTEM PROTEIN
1ut4_B4e-481719315171NO APICAL MERISTEM PROTEIN
1ut7_A4e-481719315171NO APICAL MERISTEM PROTEIN
1ut7_B4e-481719315171NO APICAL MERISTEM PROTEIN
3swm_A4e-481719318174NAC domain-containing protein 19
3swm_B4e-481719318174NAC domain-containing protein 19
3swm_C4e-481719318174NAC domain-containing protein 19
3swm_D4e-481719318174NAC domain-containing protein 19
3swp_A4e-481719318174NAC domain-containing protein 19
3swp_B4e-481719318174NAC domain-containing protein 19
3swp_C4e-481719318174NAC domain-containing protein 19
3swp_D4e-481719318174NAC domain-containing protein 19
4dul_A4e-481719315171NAC domain-containing protein 19
4dul_B4e-481719315171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002362.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801540.11e-168NAC domain-containing protein 79-like
SwissprotQ9FLR31e-75NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A1E5V4C40.0A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRINGPavir.Bb02033.1.p1e-152(Panicum virgatum)
STRINGSi030284m1e-151(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.15e-77NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]