 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Do002280.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 371aa MW: 40730 Da PI: 10.4754 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do002280.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 341.3 | 2.3e-104 | 1 | 371 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.................rernlalsekkaavaerd.......................m 58
mdddgs rn+g+ye k nlglqlms +rd+k+ +++++ +++++++++r m
Do002280.1 1 MDDDGSLGiRNWGFYETM---KGNLGLQLMSPP-DRDTKPllpngsnflqhhghhnaQQQHQHQHHPQHSHHPRGgggggggsssapggmpteptavhM 95
9*****999******965...*********986.9**************99888776566665666667777777************************ PP
GAGA_bind 59 aflqrdkalae.......rnkalverdnkllalllvensla...........salpvgvqvlsgtksidslqqlse...............pqledsav 124
+f++++++l+ ++++ ++r++k+l+ l+v +++p+g++++ +++ +++lq+++ pq +++++
Do002280.1 96 DFVRNEAWLHPsqhhhqhHHQHQHPRQQKVLHHLPVGPVGHvghpghgghavHHHPTGYGMMADAHGVHTLQMMQPqaqpqpqpqpqpqpqPQPTPQPQ 194
*********98433222222334456666666666554433788999**9*99**********999999999844447799999988665533333333 PP
GAGA_bind 125 e.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqC 222
+ +e++ p+ e ++++k+++ +kkrq++++pk+++ kk+kk +++k++ ++++ +r + ++k++++v+ng++lD s++P+PvCsCtGa++qC
Do002280.1 195 DpPVPKEESMPDPLIEDHPVIKNEPPVKKRQQGRQPKSPNPKKPKK-VAAPKENGAPNKPAPRPRGPRKTVGMVINGIDLDLSRIPTPVCSCTGAPQQC 292
33233445556667777899999999999*****************.56777777777766************************************** PP
GAGA_bind 223 YkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
Y+WG+GGWqSaCCtt+iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
Do002280.1 293 YRWGAGGWQSACCTTSISTYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLANPIDLKTFWAKHGTNKFVTIR 371
******************************************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 371 aa
Download sequence Send
to blast |
MDDDGSLGIR NWGFYETMKG NLGLQLMSPP DRDTKPLLPN GSNFLQHHGH HNAQQQHQHQ 60
HHPQHSHHPR GGGGGGGGSS SAPGGMPTEP TAVHMDFVRN EAWLHPSQHH HQHHHQHQHP 120
RQQKVLHHLP VGPVGHVGHP GHGGHAVHHH PTGYGMMADA HGVHTLQMMQ PQAQPQPQPQ 180
PQPQPQPQPT PQPQDPPVPK EESMPDPLIE DHPVIKNEPP VKKRQQGRQP KSPNPKKPKK 240
VAAPKENGAP NKPAPRPRGP RKTVGMVING IDLDLSRIPT PVCSCTGAPQ QCYRWGAGGW 300
QSACCTTSIS TYPLPMSTKR RGARIAGRKM SQGAFKKVLE KLAGEGYNLA NPIDLKTFWA 360
KHGTNKFVTI R
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP098331 | 1e-150 | FP098331.1 Phyllostachys edulis cDNA clone: bphylf058a01, full insert sequence. |
