PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002244.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 408aa    MW: 43474.4 Da    PI: 5.9086
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002244.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.61.4e-2999190187
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                 f+kv tpsdv+k++rlv+pk++ae++       +e++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+
  Do002244.1  99 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldAAANEKGLLLSFEDRAGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGaGE 190
                 89***************************955556888************************************************854344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-4191206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-2896187IPR015300DNA-binding pseudobarrel domain
CDDcd100177.33E-2697184No hitNo description
PROSITE profilePS5086313.77599204IPR003340B3 DNA binding domain
SMARTSM010191.4E-2099204IPR003340B3 DNA binding domain
PfamPF023629.3E-2799202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MDFASSSSRF SKEEDEEEEQ EPEEEEDEEA SPREIPFMTA AATASSTGGA ASPSSSPPAA  60
ASASASGSVA LRSSDGAGAS GSGGGGSDEV EVIEKEHMFD KVVTPSDVGK LNRLVIPKQH  120
AEKYFPLDAA ANEKGLLLSF EDRAGKLWRF RYSYWNSSQS YVMTKGWSRF VKEKRLDAGD  180
TVSFCRGAGE AARDRLFIDW KRRADSRDPH RLPRLPLPMA PVASPYGPWG GGAGGFFMPP  240
APPATLYEHH RFRQGLDFRN INAAAPARQL LFFGSAGMPP RASMPPPPPP PPLHNIMMVQ  300
PSPTATAGLP MVLDSVPLVN SPTAAAKRVR LFGVNLDNPQ PSGGESSQDT NALSLRMPGW  360
QRPGPLRFLE SPQHGATGAA GAESSAASSP SSSSSSKREA HSSLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-61942033113B3 domain-containing transcription factor NGA1
5os9_B2e-61942033113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276940.0KJ727694.1 Zea mays clone pUT5633 ABI3VP1 transcription factor (ABI12) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976592.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-136Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A1E5V6G80.0A0A1E5V6G8_9POAL; B3 domain-containing protein
STRINGSi011823m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-61B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]