PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002221.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 1108aa    MW: 127490 Da    PI: 8.2343
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002221.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.4e-1529116298
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 fk +     +++g +++p kfa++++g+ + +    l+ ++g++W + +  +k++++++l + W++F+ka++L+e+D ++F+  g+s+f   v vf+
  Do002221.1  29 FKLM--TGDFAKG-ISIPEKFAKNFKGQITAG--FELKAPRGETWHISV--DKRGDEMFLMSEWEDFAKAHELQENDLLLFTCCGNSSF--QVIVFE 116
                 5555..4445555.9*******9998785555..8888***********..*******************************9999999..666665 PP
2B343.65.1e-14663762199
                 EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
          B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                 f++vl++++v ++ + l++p +fa++h  + ++++ +  +  + ++W v++ y+ +++++       +Fv++n+L  gD+++F+l++  ++ +++v+v+
  Do002221.1 663 FVTVLMQKHVQRRnNFLIIPSRFAADHLTERARDIIILHRPNRKEKWVVRYYYSSYKRSF-QNLAFFKFVRDNKLHKGDICIFELMKGkRRVTMTVHVI 760
                 88999****99985667**********655556544444447779******887777663.4556899****************997779999****99 PP

                 -S CS
          B3  98 rk 99 
                 rk
  Do002221.1 761 RK 762
                 97 PP
3B338.61.9e-128128713497
                 SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 k l l+ +sg++W v++   k+ ++ ++ +GW +F++a++L+e+D ++F+ +g+ +f   v +f
  Do002221.1 812 KGLNLKAPSGQTWLVEV--AKNADELFFMSGWDDFARAHELQENDLLIFTCSGNYSF--DVLIF 871
                 4599*************..******99***********************9888777..66666 PP
4B337.73.7e-1210071099799
                  .-HHH.HTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
          B3    7 psdvl.ksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99  
                  + +v+ ++++l++   fa++h +g   ++  l l+  + ++W v++ +  + +++  +  W +F ++n+L+   +++F+l++  +++++vv+v+rk
  Do002221.1 1007 KTHVGyRNNLLTIHHGFAADHlEGR--SHDILLLRPNRKEKWHVRYYHASHARGFNCR-RWXKFIRDNRLRKDHVCIFELMKGaRTTTMVVHVLRK 1099
                  44444156889**********6444..333455555788*******666666666555.9*******************99877*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-1921120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2125118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-1827120IPR015300DNA-binding pseudobarrel domain
CDDcd100179.19E-1527115No hitNo description
SMARTSM010192.1E-1128118IPR003340B3 DNA binding domain
PfamPF023621.0E-1228115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-10237321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-8240328IPR015300DNA-binding pseudobarrel domain
CDDcd100176.16E-6243317No hitNo description
SMARTSM010190.41245342IPR003340B3 DNA binding domain
PROSITE profilePS508636.837246342IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-18655762IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-16656762IPR015300DNA-binding pseudobarrel domain
CDDcd100177.97E-15661761No hitNo description
SMARTSM010193.1E-6663763IPR003340B3 DNA binding domain
PfamPF023624.3E-12663762IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279664763IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-15793876IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-11796871No hitNo description
SMARTSM010190.0048797874IPR003340B3 DNA binding domain
PfamPF023621.4E-9811871IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-13812876IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.885814874IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-169931098IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-159941098IPR015300DNA-binding pseudobarrel domain
CDDcd100172.73E-129991098No hitNo description
SMARTSM010191.4E-710011100IPR003340B3 DNA binding domain
PROSITE profilePS5086310.05210021100IPR003340B3 DNA binding domain
PfamPF023626.1E-1010021099IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1108 aa     Download sequence    Send to blast
MVEKGCASCR EWHEHYYWEH MDVTKIRFFK LMTGDFAKGI SIPEKFAKNF KGQITAGFEL  60
KAPRGETWHI SVDKRGDEMF LMSEWEDFAK AHELQENDLL LFTCCGNSSF QVIVFEASGC  120
ERVSSMFGNQ IGPEVCKNVN DITGQHGEHY TVSDSEDTTT PSQLVGSPHN ASSSKRSSGK  180
TKPSEPESPN TSNFIVKHLA IGEEDSDDEC ANSNFYYSMF ANRLSDEEKV EILRLASIRP  240
NNPAFVTVLM KKHVQRRNNA LVIPSRFAAD HLKERAHDII LRRPNMKEKW LVRYYCSSYM  300
RSFQNLAFFK FVHDNRLHMS KPMKLRIFYG NGEIRRGPYG VDLSNFRDTT VEHPNPEGTN  360
IRDLIGWLLA YFQLDSRVSS LTVQCLCLRT LNPVCWELRE ADRTYKWRKC VEWCRRCKAG  420
LTILVQPCPK ELIKGDSCLP TPAVGESNRG DEVSVEQLQI RQAEVVHRQL EDVHGEADAG  480
EEFEQIVDEL DNVDRNAIHE EENLKKFGVM TTNLPEIYNW VIRDLRGLPL IGIIDGIYHG  540
VIRCYQKRYA AAVLHSTTMQ TPYCFRMMEH LDKKNNKALQ HTVRCMGTNE HRFQINLRVK  600
EGEPESPNTS NFIAEHSAIG KEDSDDEYAN SNCYFSMFAN QLRDDEKEEI ISLASIRPNN  660
PAFVTVLMQK HVQRRNNFLI IPSRFAADHL TERARDIIIL HRPNRKEKWV VRYYYSSYKR  720
SFQNLAFFKF VRDNKLHKGD ICIFELMKGK RRVTMTVHVI RKANGKFILM ARQGCESCRK  780
WQEHCYLEHM GASKLRFFKL MTGDFAQSII TKGLNLKAPS GQTWLVEVAK NADELFFMSG  840
WDDFARAHEL QENDLLIFTC SGNYSFDVLI FEAGGCEKVP CFFSSKKSPC MGKHSVGIVD  900
QQAEHCILSD SDDLRMPLGL IGSPNKASTS KKGGKTKPRK EPESPSSSNY HIKQEAISDE  960
EQSDDTLVDS IYYSRPASNL TADERDQIFS LASIQPGNPA FVAVLQKTHV GYRNNLLTIH  1020
HGFAADHLEG RSHDILLLRP NRKEKWHVRY YHASHARGFN CRRWXKFIRD NRLRKDHVCI  1080
FELMKGARTT TMVVHVLRKV NGRFVLVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002221.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808341.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-134Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HFH20.0A0A2S3HFH2_9POAL; Uncharacterized protein
STRINGSi024235m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.19e-21B3 family protein