PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002217.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | G2-like | ||||||||
Protein Properties | Length: 229aa MW: 24683.9 Da PI: 10.456 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.5 | 1.5e-28 | 100 | 149 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Do002217.1 100 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 149 9************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 97 | 150 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-14 | 98 | 152 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-20 | 100 | 150 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-6 | 101 | 149 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSTTSSRMTT TATPDLSLHI SPPSPAAAGG EMQVEPRLLL GLELDDDTTA AAAAKTDKAA 60 ALRQGGLQVP QQRLHQPSQT AHGFKKSSGG TGGRRNARAP RMRWTTALHA HFVHAVELLG 120 GHERATPKSV LELMNVKDLT LAHVKSHLQA RLLSLLFYQH MYRTVKGTDR SCVAGHGQAR 180 DMVFLRRGAG EVDGFDVFNS NNSVNTTTTF NNNTSSDFAA LGGFIWTPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-14 | 101 | 149 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-14 | 101 | 149 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-14 | 101 | 149 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-14 | 101 | 149 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002217.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968468 | 4e-66 | EU968468.1 Zea mays clone 321144 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442430.2 | 2e-92 | uncharacterized protein LOC8069722 isoform X1 | ||||
TrEMBL | A0A1E5W9E2 | 1e-167 | A0A1E5W9E2_9POAL; Putative transcription factor KAN4 | ||||
STRING | Sb08g019940.1 | 3e-95 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3742 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 2e-36 | G2-like family protein |