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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | B3 | ||||||||
Protein Properties | Length: 282aa MW: 30870.7 Da PI: 8.4323 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 92.2 | 3.8e-29 | 18 | 115 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ g +e++ l +ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ Do002200.1 18 FEKPLTPSDVGKLNRLVIPKQHAERYfplggaggvggGDGSEKGLLLAFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVRFERVRG 115 99**********************************9555568889************************************************7643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-39 | 12 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.45E-29 | 15 | 129 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.52E-27 | 16 | 116 | No hit | No description |
SMART | SM01019 | 1.0E-22 | 18 | 131 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.169 | 18 | 130 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-26 | 18 | 116 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MYTNLHYHHH QYEREHLFEK PLTPSDVGKL NRLVIPKQHA ERYFPLGGAG GVGGGDGSEK 60 GLLLAFEDEA GKPWRFRYSY WTSSQSYVLT KGWSRYVKEK RLDAGDVVRF ERVRGSLGAG 120 DHLFIGCRRR GESAAPAPTP PPPVRAPAPA LNAGEQQPWS PMCYSTSGSS YPTSPASPYA 180 YHSDMAHAGE ADVKSGGTPT APSRKLRLFG VNLDCGPEPE PEAATAMYGY MHQSPYAAVS 240 TVPNYWLVLQ VSLSFSYCII LEAGRINGNQ LAVNKASVFC SN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-50 | 13 | 130 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-50 | 13 | 130 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977350.1 | 1e-156 | B3 domain-containing protein Os11g0156000 | ||||
Swissprot | Q53QI0 | 1e-109 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A1E5VSQ8 | 0.0 | A0A1E5VSQ8_9POAL; B3 domain-containing protein | ||||
STRING | Si010849m | 1e-155 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11580.1 | 4e-48 | B3 family protein |
Publications ? help Back to Top | |||
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