PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002127.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 664aa    MW: 72342 Da    PI: 7.4393
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002127.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.4e-23121222199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++ ++lt+GW+ Fv++++L +gD++vF+++  +++  
  Do002127.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRXHLLTTGWSTFVNQKKLVAGDSIVFMRT--ENGDX 215
                 89****************************997556555..8999*********************************************44..66667 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  Do002127.1 216 CVGIRRA 222
                 ****996 PP
2Auxin_resp1132.9e-37278361183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a++ a ++++FevvY Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Do002127.1 278 ASNLAVSGQPFEVVYFPRASTPEFCVKAGAVRAAMRTQWCAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 361
                 5678899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-36113226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-28116223IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-19120221No hitNo description
PfamPF023623.6E-21121222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449121223IPR003340B3 DNA binding domain
SMARTSM010195.6E-20121223IPR003340B3 DNA binding domain
PfamPF065076.6E-32278361IPR010525Auxin response factor
PROSITE profilePS5174519.453597664IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MITFVDSATM ERERDSDKGL DPQLWHACAG GMVQMPPVHS KVYYFPQGHA EHAQGPVELP  60
AGRVPALVLC RVAAVRFMAD PDTDEVFAKI RLAPVRPNEP ADADDAIGAA AGAQEDKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYTADPPVQT VLAKDVHGVV WKFRHIYRGT  180
PRXHLLTTGW STFVNQKKLV AGDSIVFMRT ENGDXCVGIR RAKKGGIGGP EFLHQPPLPG  240
GNYGGFSMFL RGEEDSNKMM ATRGKVRVRV RPEEVVEASN LAVSGQPFEV VYFPRASTPE  300
FCVKAGAVRA AMRTQWCAGM RFKMAFETED SSRISWFMGT VSAVQVADPI RWPNSPWRLL  360
QVAWDEPDLL QNVKRVSPWL VELVSNMPAI HLSPFSPPRK KLCVPLYPEL PLEGQFPTPM  420
FHGSPLGRGV APMCYFPDGT PAGIQGARHA QFGISLSDLH LNKLQSSLSP HGLHQLDHGM  480
QPRIAAGLII GHPAARDDIS CLLTIGTPQN KKSDVKKAAA PQLMLFGKPI LTEQQISLGN  540
AAGFPLSAPK KSPSADNAEK TVSNSDVSSP GSNQDGTSSG GAPLCQDKKA LDLGLETGHC  600
KVFLQSEDVG RTLDLSDVGS YEELYQRLAD MFGIEKAELM SHVFYRDASG ELKHTTGDKP  660
FRFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-792038251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966255.10.0auxin response factor 18
RefseqXP_004966256.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1E5VAF70.0A0A1E5VAF7_9POAL; Auxin response factor
STRINGSi005991m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]