PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

AP2

Protein Properties

Length: 444aa MW: 46454.1 Da PI: 7.1279

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001828.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	22.6	2.7e-07	113	134	1	22
AP2 1 sgykGVrwdkkrgrWvAeIrdp 22 s+y+GV++++++grW+++I+ + Do001828.1 113 SQYRGVTFYRRTGRWESHIWAY 134 78*****************984 PP
2	AP2	46.4	9.6e-15	187	237	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g Do001828.1 187 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 237 89******.7**5553..2.26********************99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.4E-5	113	152	IPR016177	DNA-binding domain
SMART	SM00380	5.6E-7	114	157	IPR001471	AP2/ERF domain
Pfam	PF00847	9.8E-11	187	237	IPR001471	AP2/ERF domain
CDD	cd00018	3.20E-25	187	247	No hit	No description
SuperFamily	SSF54171	1.83E-18	187	247	IPR016177	DNA-binding domain
PROSITE profile	PS51032	16.489	188	245	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.6E-17	188	245	IPR001471	AP2/ERF domain
SMART	SM00380	1.2E-33	188	251	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010073	Biological Process	meristem maintenance
GO:0010093	Biological Process	specification of floral organ identity
GO:0048316	Biological Process	seed development
GO:0048481	Biological Process	plant ovule development
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MWDLNDSPAA EATPPSPSAD DSGASSSSAA ALVEIPDDAD DDSAAAAAAD AVVTRQFFPA 60 PAAVAPGSAS ARGGWLRLSA AAPPPAGAAT AAGPAGGASS NKKSRRGPRS RSSQYRGVTF 120 YRRTGRWESH IWAYDRAAIK FRGVEADINF SLEDYQDDMK QQMGNLSKEE FVHVLRRQST 180 GYPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EEEAARAYDR AAIKCNGKDA 240 VTNFDPSIYA EELEPAAATS GGGGGDEHNL DLSLGSSAGS KRGSLDGGSG AGDDETSDQR 300 VPMAFDLDWQ TAAARSTKAK FDASSKQPQM PPALQAAHHL PFSPRHQQFL STGDPGTAGG 360 LSLAIGGPGG AGGHWPPQLQ QQLLHGWGNG GGTSWPLPPH PPPPTNAAAA SAAAASSRFP 420 PYVTTQGPPS WVQKNGFHSL ARPT

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MWDLNDSPAA EATPPSPSAD DSGASSSSAA ALVEIPDDAD DDSAAAAAAD AVVTRQFFPA  60
PAAVAPGSAS ARGGWLRLSA AAPPPAGAAT AAGPAGGASS NKKSRRGPRS RSSQYRGVTF  120
YRRTGRWESH IWAYDRAAIK FRGVEADINF SLEDYQDDMK QQMGNLSKEE FVHVLRRQST  180
GYPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EEEAARAYDR AAIKCNGKDA  240
VTNFDPSIYA EELEPAAATS GGGGGDEHNL DLSLGSSAGS KRGSLDGGSG AGDDETSDQR  300
VPMAFDLDWQ TAAARSTKAK FDASSKQPQM PPALQAAHHL PFSPRHQQFL STGDPGTAGG  360
LSLAIGGPGG AGGHWPPQLQ QQLLHGWGNG GGTSWPLPPH PPPPTNAAAA SAAAASSRFP  420
PYVTTQGPPS WVQKNGFHSL ARPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269\|PubMed:22408071}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001828.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT056188	0.0	BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684171.1	0.0	AP2-like ethylene-responsive transcription factor TOE3 isoform X1
Swissprot	B8AVJ9	1e-169	APL25_ORYSI; APETALA2-like protein 5
TrEMBL	A0A1E5VX80	0.0	A0A1E5VX80_9POAL; Floral homeotic protein APETALA 2
STRING	Si012635m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5514	36	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.2	6e-78	AP2 family protein

Publications ? help Back to Top
Zhou Y, et al. Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1. Plant Cell, 2012. 24(3): p. 1034-48 [PMID:22408071]