 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Do001699.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
| Family |
MYB |
| Protein Properties |
Length: 330aa MW: 36015.3 Da PI: 5.966 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Do001699.1 | genome | Dichan | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.6 | 2.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
Do001699.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
788*******************************************97 PP
|
| 2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr+T+eE++ ++ +++ G++ W+ Ia++++ gRt++++k++w+++
Do001699.1 67 RGRFTAEEEKMIISLHAIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
89********************.*********.************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60
LRPDIRRGRF TAEEEKMIIS LHAIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPA 120
ASTTSPSVTT SSPPCSTAAS DAAALGHLQT PFSAAEHQLD AIISQSLALP SKLGAGQDSP 180
PAPLPPHCPF FMFDTSVSPA SSLTSPGVQL QHPFLTFTAA AMDAPSYQLP PLVDGIGMGM 240
SAMDCGLGEE RGHDHEGNNG QAAGMANGGG CCYGQQQKQE EEQLGQDQWD DESAQHLLMW 300
DDDQELTPSN LEAMESGAHS LLFMGPNDHA
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HF679413 | 0.0 | HF679413.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB7 protein. |
