PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001687.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 336aa    MW: 35824.5 Da    PI: 10.2518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001687.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14101145347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
       Do001687.1 101 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 145
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.96894150IPR017930Myb domain
SuperFamilySSF466891.22E-1795150IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1897149IPR006447Myb domain, plants
SMARTSM007171.4E-1198148IPR001005SANT/Myb domain
PfamPF002491.9E-12101145IPR001005SANT/Myb domain
CDDcd001672.74E-10101146No hitNo description
Gene3DG3DSA:1.10.10.603.2E-12101144IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MPQDSRPAGM RLFGVTIAPA PEADPPDRDP SPNPPVAVRE DVMRKCKSMG NLAALGAAAD  60
ADGGGAGADA GGAGDGYLSD GGLMQSSGKR RRAQERKKAV PWTEEEHRTF LAGLEKLGKG  120
DWRGIAKNFV TTRTPTQVAS HAQKYFLRQT NPNKKKRRSS LFDMMPGELS PASNCPILPP  180
SMAKVHDVVA MTKQLQNSNL EGVSSSNGAN IAPQVGRDLP PVPSFRATNM DSSFSKLNHM  240
ERFWRTPYTF KPIPRAPDGT SSSTSVAANI ASPVAKANLT ACTSTFLSPR SDTSSLPLKA  300
DRPAETKDLE LTVAPPSQQN MTNMSSQNAV GVIQVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153157KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001687.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794580.0HF679458.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB52 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822191.10.0transcription factor MYBS3-like isoform X1
TrEMBLA0A1E5VMR70.0A0A1E5VMR7_9POAL; Transcription factor DIVARICATA
STRINGSi014031m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-38MYB_related family protein