PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001454.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 696aa    MW: 77960.7 Da    PI: 5.1228
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001454.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07112135327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C +f++ G C  GdrC+F Hgp
  Do001454.1 112 MVPCYYFQK-GNCLKGDRCPFYHGP 135
                 789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00142856IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9812857IPR000571Zinc finger, CCCH-type
PfamPF156634.7E-123084No hitNo description
PROSITE profilePS5010310.8595985IPR000571Zinc finger, CCCH-type
SMARTSM003560.666184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.051109136IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6109135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4113135IPR000571Zinc finger, CCCH-type
PfamPF146080.27114134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MEVDGAAEAG AAAAAGGAKP LTPEEEALRR STDCVYFLAS PLTCKKGNEC DFRHSEGARM  60
NPRDCWYWVN GSCLNPKCSF RHPPIDGLFG APTPGIPPVS SHYGAYNPGK QMVPCYYFQK  120
GNCLKGDRCP FYHGPQAAGN NPTEQVAKVS SFPLEPPQAK KIEEPSAPNI STQQGARIID  180
DRTMIHVAKS GVGAIPAELA PNAVKSRPNS EQAPNNTSAV KKNFTTEEHH PMHYQNQVPV  240
EGDSVQDWNE NFQMPLTDDL PQNSREADDF LGESSPGFDV LVDNDADGAA YLHDEEDFGG  300
DMYPVEDYEY APADFDIRAH HEGEQFNGMG ESGQIGLYDG YERKRRRSSS ERSIDRPFHS  360
DRRFLHRGLD RDEIDGSDLR HQLRRRRING PSTAISPERA NGGRHWRDER YRERAHGAHY  420
THRDRHQGPQ GSTLSSRLQA RIKLPGRSPD RVDTCFEDER DRRRLRERFS PVRRTDFHGG  480
RHREPGQHQE RSHRRSSELV SSVRHADGLS FRRDAVDSVR FAARRNLGEP RKANGIVESE  540
ASLDFEGPKP LSVILQRKRE AAGGNNSSSS YEKSAEVAAM QTDSMVESEK KGRNNIIRSE  600
KSGSGDEEYK EEDHIPVEGH GQSLSHGDKF EVEDAAEVDA EGNQEADNYD QRDGESDDYE  660
AIEGHDYKSE DENAYQDDED FDDDDDFAQK VGVVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342346RKRRR
2342347RKRRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001454.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823987.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1E5W5W10.0A0A1E5W5W1_9POAL; Zinc finger CCCH domain-containing protein 32
STRINGPavir.J37523.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]