PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do001404.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 88aa MW: 9198.24 Da PI: 8.1159

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do001404.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L+ H r+H Do001404.1 60 YPCHVCHRRFPSVKALHGHVRSH 82 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	0.001	56	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.07E-6	56	83	No hit	No description
Pfam	PF13912	4.8E-7	60	82	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.494	60	82	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MSGAPVFSAG VAAGGSGGGE EPNRPCPPKS AHEVNGLPAA LRNKQKLAPS RNDDPEEEDY 60 PCHVCHRRFP SVKALHGHVR SHGPAALN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do001404.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021305611.1	8e-12	zinc finger protein 467
TrEMBL	A0A1E5VRW7	1e-56	A0A1E5VRW7_9POAL; Uncharacterized protein
STRING	Pavir.J33608.1.p	3e-13	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13010	27	29