PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001262.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 194aa    MW: 22187.2 Da    PI: 9.0401
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001262.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.34e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                kri+n +nrqvtfskRr g++KKA+EL +LCdaev +i+fsstg+ly+++s
  Do001262.1  9 KRIDNATNRQVTFSKRRSGLFKKAKELAILCDAEVGLIVFSSTGRLYDFAS 59
                79***********************************************86 PP
2K-box51.93.3e-18591233498
       K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 + R+llG++ +  ++k+Lq+Le++Le sl++iR kK++l+++qi+el +k   +++en +L++k+
  Do001262.1  59 SARQLLGQQFSGRDVKDLQNLEDKLEMSLRNIRMKKDQLMIDQIQELNRKGSLMHRENLELHNKV 123
                 56************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.758161IPR002100Transcription factor, MADS-box
SMARTSM004328.8E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-28261IPR002100Transcription factor, MADS-box
CDDcd002651.28E-37259No hitNo description
PRINTSPR004041.1E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.03339129IPR002487Transcription factor, K-box
PfamPF014869.5E-1759123IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGRGKIEIKR IDNATNRQVT FSKRRSGLFK KAKELAILCD AEVGLIVFSS TGRLYDFASA  60
RQLLGQQFSG RDVKDLQNLE DKLEMSLRNI RMKKDQLMID QIQELNRKGS LMHRENLELH  120
NKVNLVYQEN IELQRKVYEQ GANEHPASST VKHSSLDTEN EDVLVNLELS QPRSVQRDKS  180
ETPSIGETFV QISG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-19160160MEF2C
5f28_B6e-19160160MEF2C
5f28_C6e-19160160MEF2C
5f28_D6e-19160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5413851e-59JX541385.1 Paspalum vaginatum clone StvSingle_HKZDOCN02EGLEG microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821378.11e-107MADS-box transcription factor 23-like
SwissprotQ6EP493e-62MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1E5VGQ11e-139A0A1E5VGQ1_9POAL; MADS-box transcription factor 27
STRINGPavir.Fb01587.1.p7e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.27e-64AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]