PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do001245.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 501aa    MW: 53532.2 Da    PI: 8.6876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do001245.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-066688123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++Cg+ F r  nL+ H r+H
  Do001245.1 66 YVCEICGQGFQRDQNLQMHRRRH 88
                9*********************9 PP
2zf-C2H211.60.00085145166223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C  C+k +  +s++k H++t+
  Do001245.1 145 ACARCSKAYAVHSDYKAHLKTC 166
                 6*******************98 PP
3zf-C2H210.80.0015174192523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg++Fsr +++  H+ t+
  Do001245.1 174 DCGRVFSRVESFIEHQDTC 192
                 9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-56588No hitNo description
Gene3DG3DSA:3.30.160.602.8E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00326688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355110108138IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.76E-5139164No hitNo description
SMARTSM00355230144171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MLSSCAPTAL PPQEAGAAPP EPFRSLQIAT TSGAGAKKKR RPAGTPDPDA EVVSLSPRTL  60
LESDRYVCEI CGQGFQRDQN LQMHRRRHKV PWKLLKREAG EAARKRVFVC PEPSCLHHDP  120
SHALGDLVGI KKHFRRKHSG HRQWACARCS KAYAVHSDYK AHLKTCGTRG HTCDCGRVFS  180
RVESFIEHQD TCNAGRPRAE TLSSPASGGG GGGAGFGVAA STSQHQQQQR QMHAAAAALS  240
RTASSASPSS GGDLRVSPVA WPGPAMASPT AAAAFHLFDP ALSSPPTPHE RPGVHNLELQ  300
LMPPRGSCGA PVAIGCCATQ HSAHAVTPHM VADPMRLQLS IGFGVGGGGA RDDDGEMSAS  360
AAAARLKEEA REQLRLAMAE KAAADEARAQ ARQQAEMAEK ELASARRMRQ QAQAELGRAH  420
ALRDHAVRQV DATLLQVTCY SCRCKFRARA TGAMSSEVAS YVSSVVTEGG DAEVDDNHHH  480
HHRQLNADDA PSHARTMMDI N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-17140204367Zinc finger protein JACKDAW
5b3h_F5e-17140204367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13640KKKRR
23641KKKRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo001245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067960.0AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBankAK1195950.0AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821510.10.0protein indeterminate-domain 16-like
TrEMBLA0A1E5W8D80.0A0A1E5W8D8_9POAL; Protein SHOOT GRAVITROPISM 5
STRINGPavir.Fb01741.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-103C2H2-like zinc finger protein